FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5157, 126 aa 1>>>pF1KE5157 126 - 126 aa - 126 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9867+/-0.000264; mu= 13.2242+/- 0.017 mean_var=57.8382+/-11.733, 0's: 0 Z-trim(120.7): 5 B-trim: 2304 in 2/49 Lambda= 0.168642 statistics sampled from 36181 (36186) to 36181 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.424), width: 16 Scan time: 4.690 The best scores are: opt bits E(85289) NP_001288763 (OMIM: 218340,615140) protein C10 iso ( 126) 809 203.8 6.2e-53 NP_612434 (OMIM: 218340,615140) protein C10 isofor ( 126) 809 203.8 6.2e-53 NP_001288765 (OMIM: 218340,615140) protein C10 iso ( 113) 707 178.9 1.7e-45 NP_001288767 (OMIM: 218340,615140) protein C10 iso ( 91) 605 154.1 4.1e-38 NP_001288766 (OMIM: 218340,615140) protein C10 iso ( 97) 337 88.9 1.8e-18 >>NP_001288763 (OMIM: 218340,615140) protein C10 isoform (126 aa) initn: 809 init1: 809 opt: 809 Z-score: 1071.3 bits: 203.8 E(85289): 6.2e-53 Smith-Waterman score: 809; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126) 10 20 30 40 50 60 pF1KE5 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG 70 80 90 100 110 120 pF1KE5 GSVAAS :::::: NP_001 GSVAAS >>NP_612434 (OMIM: 218340,615140) protein C10 isoform 1 (126 aa) initn: 809 init1: 809 opt: 809 Z-score: 1071.3 bits: 203.8 E(85289): 6.2e-53 Smith-Waterman score: 809; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126) 10 20 30 40 50 60 pF1KE5 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG 70 80 90 100 110 120 pF1KE5 GSVAAS :::::: NP_612 GSVAAS >>NP_001288765 (OMIM: 218340,615140) protein C10 isoform (113 aa) initn: 707 init1: 707 opt: 707 Z-score: 937.9 bits: 178.9 E(85289): 1.7e-45 Smith-Waterman score: 707; 99.1% identity (100.0% similar) in 109 aa overlap (18-126:5-113) 10 20 30 40 50 60 pF1KE5 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ .:::::::::::::::::::::::::::::::::::::::::: NP_001 MNDLMVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ 10 20 30 40 70 80 90 100 110 120 pF1KE5 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG 50 60 70 80 90 100 pF1KE5 GSVAAS :::::: NP_001 GSVAAS 110 >>NP_001288767 (OMIM: 218340,615140) protein C10 isoform (91 aa) initn: 605 init1: 605 opt: 605 Z-score: 805.2 bits: 154.1 E(85289): 4.1e-38 Smith-Waterman score: 605; 100.0% identity (100.0% similar) in 91 aa overlap (36-126:1-91) 10 20 30 40 50 60 pF1KE5 TQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQIQQEV :::::::::::::::::::::::::::::: NP_001 MDEARDNACNDMGKMLQFVLPVATQIQQEV 10 20 30 70 80 90 100 110 120 pF1KE5 IKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAGGSVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAGGSVAA 40 50 60 70 80 90 pF1KE5 S : NP_001 S >>NP_001288766 (OMIM: 218340,615140) protein C10 isoform (97 aa) initn: 337 init1: 337 opt: 337 Z-score: 452.4 bits: 88.9 E(85289): 1.8e-18 Smith-Waterman score: 548; 77.0% identity (77.0% similar) in 126 aa overlap (1-126:1-97) 10 20 30 40 50 60 pF1KE5 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMG------------ 10 20 30 40 70 80 90 100 110 120 pF1KE5 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG ::::::::::::::::::::::::::::::::::::::::::: NP_001 -----------------VLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG 50 60 70 80 90 pF1KE5 GSVAAS :::::: NP_001 GSVAAS 126 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:08:25 2016 done: Mon Nov 7 22:08:26 2016 Total Scan time: 4.690 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]