FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2260, 517 aa
  1>>>pF1KE2260 517 - 517 aa - 517 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6041+/-0.000855; mu= 9.6003+/- 0.051
 mean_var=281.5698+/-64.318, 0's: 0 Z-trim(115.0): 645  B-trim: 0 in 0/54
 Lambda= 0.076433
 statistics sampled from 14771 (15582) to 14771 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.479), width:  16
 Scan time:  3.780

The best scores are:                                      opt bits E(32554)
CCDS8414.1 HINFP gene_id:25988|Hs108|chr11         ( 517) 3751 427.2 2.1e-119
CCDS58188.1 HINFP gene_id:25988|Hs108|chr11        ( 419) 2861 329.0 6.5e-90


>>CCDS8414.1 HINFP gene_id:25988|Hs108|chr11              (517 aa)
 initn: 3751 init1: 3751 opt: 3751  Z-score: 2257.1  bits: 427.2 E(32554): 2.1e-119
Smith-Waterman score: 3751; 99.8% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KE2 MPPPGKVPRKENLWLQCEWGSCSFVCSTMEKFFEHVTQHLQQHLHGSGEEEEEEEEDDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MPPPGKVPRKENLWLQCEWGSCSFVCSTMEKFFEHVTQHLQQHLHGSGEEEEEEEEDDPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 EEEFSCLWQECGFCSLDSSADLIRHVYFHCYHTKLKQWGLQALQSQADLGPCILDFQSRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 EEEFSCLWQECGFCSLDSSADLIRHVYFHCYHTKLKQWGLQALQSQADLGPCILDFQSRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VIPDIPDHFLCLWEHCENSFDNPEWFYRHVEAHSLCCEYEAVGKDNPVVLCGWKGCTCTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VIPDIPDHFLCLWEHCENSFDNPEWFYRHVEAHSLCCEYEAVGKDNPVVLCGWKGCTCTF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 KDRSKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQTSLDQQHFQCSHCSKRFAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 KDRSKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQTSLDQQHFQCSHCSKRFAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ERLLRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHSEDRPFKCDCCDYSCKNLIDLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 ERLLRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHSEDRPFKCDCCDYSCKNLIDLQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 KHLDTHSEEPAYRCDFENCTFSARSLCSIKSHYRKVHEGDSEPRYKCHVCDKCFTRGNNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 KHLDTHSEEPAYRCDFENCTFSARSLCSIKSHYRKVHEGDSEPRYKCHVCDKCFTRGNNL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 TVHLRKKHQFKWPSGHPRFRYKEHEDGYMRLQLVRYESVELTQQLLRQPQEGSGLGTSLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 TVHLRKKHQFKWPSGHPRFRYKEHEDGYMRLQLVRYESVELTQQLLRQPQEGSGLGTSLN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 ESSLQGIILETVPGEPGRKEEEEEGKGSEGTALSASQDNPSSVIHVVNQTNAQGQQEIVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 ESSLQGIILETVPGEPGRKEEEEEGKGSEGTALSASQDNPSSVIHVVNQTNAQGQQEIVY
              430       440       450       460       470       480

              490       500       510       
pF1KE2 YVLSEAPGEPPPVPEPPSGGIMEKLQGIAEEPEIQMV
       ::::::::::::.::::::::::::::::::::::::
CCDS84 YVLSEAPGEPPPAPEPPSGGIMEKLQGIAEEPEIQMV
              490       500       510       

>>CCDS58188.1 HINFP gene_id:25988|Hs108|chr11             (419 aa)
 initn: 2861 init1: 2861 opt: 2861  Z-score: 1727.7  bits: 329.0 E(32554): 6.5e-90
Smith-Waterman score: 2861; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380)

               10        20        30        40        50        60
pF1KE2 MPPPGKVPRKENLWLQCEWGSCSFVCSTMEKFFEHVTQHLQQHLHGSGEEEEEEEEDDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MPPPGKVPRKENLWLQCEWGSCSFVCSTMEKFFEHVTQHLQQHLHGSGEEEEEEEEDDPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 EEEFSCLWQECGFCSLDSSADLIRHVYFHCYHTKLKQWGLQALQSQADLGPCILDFQSRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EEEFSCLWQECGFCSLDSSADLIRHVYFHCYHTKLKQWGLQALQSQADLGPCILDFQSRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VIPDIPDHFLCLWEHCENSFDNPEWFYRHVEAHSLCCEYEAVGKDNPVVLCGWKGCTCTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VIPDIPDHFLCLWEHCENSFDNPEWFYRHVEAHSLCCEYEAVGKDNPVVLCGWKGCTCTF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 KDRSKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQTSLDQQHFQCSHCSKRFAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KDRSKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQTSLDQQHFQCSHCSKRFAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ERLLRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHSEDRPFKCDCCDYSCKNLIDLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ERLLRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHSEDRPFKCDCCDYSCKNLIDLQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 KHLDTHSEEPAYRCDFENCTFSARSLCSIKSHYRKVHEGDSEPRYKCHVCDKCFTRGNNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KHLDTHSEEPAYRCDFENCTFSARSLCSIKSHYRKVHEGDSEPRYKCHVCDKCFTRGNNL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 TVHLRKKHQFKWPSGHPRFRYKEHEDGYMRLQLVRYESVELTQQLLRQPQEGSGLGTSLN
       ::::::::::::::::::::                                        
CCDS58 TVHLRKKHQFKWPSGHPRFRLGHFCIPLPGFAALYAPTSPGTRNMKMAICGCSWFATRV 
              370       380       390       400       410          




517 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:59:27 2016 done: Sun Nov  6 14:59:27 2016
 Total Scan time:  3.780 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]