FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7577, 218 aa 1>>>pF1KB7577 218 - 218 aa - 218 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.7173+/-0.000357; mu= -2.6688+/- 0.022 mean_var=326.9720+/-67.110, 0's: 0 Z-trim(124.1): 1 B-trim: 0 in 0/62 Lambda= 0.070928 statistics sampled from 45051 (45052) to 45051 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.528), width: 16 Scan time: 5.760 The best scores are: opt bits E(85289) NP_006275 (OMIM: 600475) transcription initiation ( 218) 1424 157.9 1.2e-38 >>NP_006275 (OMIM: 600475) transcription initiation fact (218 aa) initn: 1424 init1: 1424 opt: 1424 Z-score: 815.0 bits: 157.9 E(85289): 1.2e-38 Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218) 10 20 30 40 50 60 pF1KB7 MSCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MSCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 TGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 TGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDFL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 MQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA 130 140 150 160 170 180 190 200 210 pF1KB7 SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYFT :::::::::::::::::::::::::::::::::::::: NP_006 SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYFT 190 200 210 218 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:16:05 2016 done: Sun Nov 6 15:16:06 2016 Total Scan time: 5.760 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]