FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8948, 316 aa 1>>>pF1KB8948 316 - 316 aa - 316 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 15.1023+/-0.000488; mu= -28.0460+/- 0.030 mean_var=716.1494+/-150.150, 0's: 0 Z-trim(123.8): 38 B-trim: 807 in 1/61 Lambda= 0.047926 statistics sampled from 44083 (44134) to 44083 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.517), width: 16 Scan time: 8.470 The best scores are: opt bits E(85289) NP_000067 (OMIM: 130650,600856,614732) cyclin-depe ( 316) 2131 161.7 1.8e-39 XP_016872577 (OMIM: 130650,600856,614732) PREDICTE ( 316) 2131 161.7 1.8e-39 NP_001116102 (OMIM: 130650,600856,614732) cyclin-d ( 305) 2069 157.4 3.5e-38 NP_001116103 (OMIM: 130650,600856,614732) cyclin-d ( 305) 2069 157.4 3.5e-38 XP_005252789 (OMIM: 130650,600856,614732) PREDICTE ( 175) 593 55.1 1.2e-07 >>NP_000067 (OMIM: 130650,600856,614732) cyclin-dependen (316 aa) initn: 2131 init1: 2131 opt: 2131 Z-score: 829.4 bits: 161.7 E(85289): 1.8e-39 Smith-Waterman score: 2131; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316) 10 20 30 40 50 60 pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA 250 260 270 280 290 300 310 pF1KB8 APGVGSVEQTPRKRLR :::::::::::::::: NP_000 APGVGSVEQTPRKRLR 310 >>XP_016872577 (OMIM: 130650,600856,614732) PREDICTED: c (316 aa) initn: 2131 init1: 2131 opt: 2131 Z-score: 829.4 bits: 161.7 E(85289): 1.8e-39 Smith-Waterman score: 2131; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316) 10 20 30 40 50 60 pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA 250 260 270 280 290 300 310 pF1KB8 APGVGSVEQTPRKRLR :::::::::::::::: XP_016 APGVGSVEQTPRKRLR 310 >>NP_001116102 (OMIM: 130650,600856,614732) cyclin-depen (305 aa) initn: 2069 init1: 2069 opt: 2069 Z-score: 806.5 bits: 157.4 E(85289): 3.5e-38 Smith-Waterman score: 2069; 100.0% identity (100.0% similar) in 305 aa overlap (12-316:1-305) 10 20 30 40 50 60 pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR 10 20 30 40 70 80 90 100 110 120 pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE 50 60 70 80 90 100 130 140 150 160 170 180 pF1KB8 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP 110 120 130 140 150 160 190 200 210 220 230 240 pF1KB8 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD 170 180 190 200 210 220 250 260 270 280 290 300 pF1KB8 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA 230 240 250 260 270 280 310 pF1KB8 APGVGSVEQTPRKRLR :::::::::::::::: NP_001 APGVGSVEQTPRKRLR 290 300 >>NP_001116103 (OMIM: 130650,600856,614732) cyclin-depen (305 aa) initn: 2069 init1: 2069 opt: 2069 Z-score: 806.5 bits: 157.4 E(85289): 3.5e-38 Smith-Waterman score: 2069; 100.0% identity (100.0% similar) in 305 aa overlap (12-316:1-305) 10 20 30 40 50 60 pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR 10 20 30 40 70 80 90 100 110 120 pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE 50 60 70 80 90 100 130 140 150 160 170 180 pF1KB8 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP 110 120 130 140 150 160 190 200 210 220 230 240 pF1KB8 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD 170 180 190 200 210 220 250 260 270 280 290 300 pF1KB8 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA 230 240 250 260 270 280 310 pF1KB8 APGVGSVEQTPRKRLR :::::::::::::::: NP_001 APGVGSVEQTPRKRLR 290 300 >>XP_005252789 (OMIM: 130650,600856,614732) PREDICTED: c (175 aa) initn: 610 init1: 586 opt: 593 Z-score: 258.1 bits: 55.1 E(85289): 1.2e-07 Smith-Waterman score: 602; 71.0% identity (76.8% similar) in 138 aa overlap (12-140:1-135) 10 20 30 40 50 60 pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR ::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR 10 20 30 40 70 80 90 100 110 pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVG---------RCRLLLAPRPVAV ::::::::::::::::::::::::::::::::::::.. : : ..:: : . XP_005 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQISSPSARDQRLRSRRAMSPRRVPL 50 60 70 80 90 100 120 130 140 150 160 170 pF1KB8 AVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAA .::: : : . : :. : XP_005 Q---APPLAWARWSRPRARGCGEPKPKEPRGNLPGQRTLEGRWASAGTVHVAATGGGCRR 110 120 130 140 150 160 316 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 19:36:55 2016 done: Mon Nov 7 19:36:57 2016 Total Scan time: 8.470 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]