FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5183, 115 aa 1>>>pF1KE5183 115 - 115 aa - 115 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9725+/-0.00025; mu= 9.4403+/- 0.016 mean_var=94.3692+/-18.969, 0's: 0 Z-trim(123.4): 5 B-trim: 1861 in 2/52 Lambda= 0.132026 statistics sampled from 43169 (43174) to 43169 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.506), width: 16 Scan time: 4.670 The best scores are: opt bits E(85289) NP_000995 (OMIM: 180530) 60S acidic ribosomal prot ( 115) 719 145.3 2.1e-35 NP_998890 (OMIM: 180520) 60S acidic ribosomal prot ( 89) 199 46.1 1.1e-05 NP_000994 (OMIM: 180520) 60S acidic ribosomal prot ( 114) 199 46.2 1.4e-05 NP_000993 (OMIM: 180510) 60S acidic ribosomal prot ( 317) 165 40.0 0.0027 NP_444505 (OMIM: 180510) 60S acidic ribosomal prot ( 317) 165 40.0 0.0027 >>NP_000995 (OMIM: 180530) 60S acidic ribosomal protein (115 aa) initn: 719 init1: 719 opt: 719 Z-score: 756.6 bits: 145.3 E(85289): 2.1e-35 Smith-Waterman score: 719; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115) 10 20 30 40 50 60 pF1KE5 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 KLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 70 80 90 100 110 >>NP_998890 (OMIM: 180520) 60S acidic ribosomal protein (89 aa) initn: 183 init1: 170 opt: 199 Z-score: 222.8 bits: 46.1 E(85289): 1.1e-05 Smith-Waterman score: 199; 66.7% identity (81.7% similar) in 60 aa overlap (59-115:31-89) 30 40 50 60 70 80 pF1KE5 SVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLA-SVPAGG-AVAVSAAPGSAAPAAGS ::.: .: ::: : :..::: ...:: .. NP_998 MASVSELACIYSALILHDDEVTVTALANVNIGSLICNVGAGGPAPAAGAAP-AGGPAPST 10 20 30 40 50 90 100 110 pF1KE5 APAAAEEKKDE-KKEESEESDDDMGFGLFD : : ::::: : :::::::::::::::::: NP_998 AAAPAEEKKVEAKKEESEESDDDMGFGLFD 60 70 80 >>NP_000994 (OMIM: 180520) 60S acidic ribosomal protein (114 aa) initn: 183 init1: 170 opt: 199 Z-score: 221.3 bits: 46.2 E(85289): 1.4e-05 Smith-Waterman score: 207; 48.0% identity (69.6% similar) in 102 aa overlap (26-115:15-114) 10 20 30 40 50 pF1KE5 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIED----VIA :: . . . .:..: .: . : :.: ..: NP_000 MASVSELACIYSALILHDDEVTVTEDKINALI-KAAGVNVEPFWPGLFA 10 20 30 40 60 70 80 90 100 pF1KE5 QG-----IGKLA-SVPAGG-AVAVSAAPGSAAPAAGSAPAAAEEKKDE-KKEESEESDDD .. ::.: .: ::: : :..::: ...:: ..: : ::::: : ::::::::::: NP_000 KALANVNIGSLICNVGAGGPAPAAGAAP-AGGPAPSTAAAPAEEKKVEAKKEESEESDDD 50 60 70 80 90 100 110 pF1KE5 MGFGLFD ::::::: NP_000 MGFGLFD 110 >>NP_000993 (OMIM: 180510) 60S acidic ribosomal protein (317 aa) initn: 225 init1: 144 opt: 165 Z-score: 180.0 bits: 40.0 E(85289): 0.0027 Smith-Waterman score: 165; 61.1% identity (72.2% similar) in 54 aa overlap (62-115:269-317) 40 50 60 70 80 90 pF1KE5 IEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSAAPGSAAPAAGSAPAAA ::. : :.: :: .:::::..::: NP_000 HSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPA-- 240 250 260 270 280 290 100 110 pF1KE5 EEKKDEKKEESEESDDDMGFGLFD : : ::::::::.:::::::: NP_000 ---KVEAKEESEESDEDMGFGLFD 300 310 >>NP_444505 (OMIM: 180510) 60S acidic ribosomal protein (317 aa) initn: 225 init1: 144 opt: 165 Z-score: 180.0 bits: 40.0 E(85289): 0.0027 Smith-Waterman score: 165; 61.1% identity (72.2% similar) in 54 aa overlap (62-115:269-317) 40 50 60 70 80 90 pF1KE5 IEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSAAPGSAAPAAGSAPAAA ::. : :.: :: .:::::..::: NP_444 HSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPA-- 240 250 260 270 280 290 100 110 pF1KE5 EEKKDEKKEESEESDDDMGFGLFD : : ::::::::.:::::::: NP_444 ---KVEAKEESEESDEDMGFGLFD 300 310 115 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:22:24 2016 done: Mon Nov 7 22:22:24 2016 Total Scan time: 4.670 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]