FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0290, 292 aa 1>>>pF1KE0290 292 - 292 aa - 292 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2920+/-0.000243; mu= 9.6129+/- 0.015 mean_var=164.7848+/-34.090, 0's: 0 Z-trim(126.4): 4 B-trim: 2905 in 1/57 Lambda= 0.099912 statistics sampled from 52198 (52215) to 52198 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.861), E-opt: 0.2 (0.612), width: 16 Scan time: 7.960 The best scores are: opt bits E(85289) NP_955631 (OMIM: 608226,615413) nanos homolog 1 [H ( 292) 2063 307.9 1.5e-83 NP_001025032 (OMIM: 608228) nanos homolog 2 [Homo ( 138) 284 51.2 1.3e-06 NP_001092092 (OMIM: 608229) nanos homolog 3 [Homo ( 192) 263 48.3 1.4e-05 XP_011526266 (OMIM: 608229) PREDICTED: nanos homol ( 196) 263 48.3 1.4e-05 >>NP_955631 (OMIM: 608226,615413) nanos homolog 1 [Homo (292 aa) initn: 2063 init1: 2063 opt: 2063 Z-score: 1621.2 bits: 307.9 E(85289): 1.5e-83 Smith-Waterman score: 2063; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292) 10 20 30 40 50 60 pF1KE0 MEAFPWAPRSPRRGRAPPPMALVPSARYVSAPGPAHPQPFSSWNDYLGLATLITKAVDGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_955 MEAFPWAPRSPRRGRAPPPMALVPSARYVSAPGPAHPQPFSSWNDYLGLATLITKAVDGE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 PRFGCARGGNGGGGSPPSSSSSSCCSPHTGAGPGALGPALGPPDYDEDDDDDSDEPGSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_955 PRFGCARGGNGGGGSPPSSSSSSCCSPHTGAGPGALGPALGPPDYDEDDDDDSDEPGSRG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 RYLGSALELRALELCAGPAEAGLLEERFAELSPFAGRAAAVLLGCAPAAAAAATTTSEAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_955 RYLGSALELRALELCAGPAEAGLLEERFAELSPFAGRAAAVLLGCAPAAAAAATTTSEAT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 PREERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_955 PREERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVL 190 200 210 220 230 240 250 260 270 280 290 pF1KE0 CPVLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_955 CPVLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR 250 260 270 280 290 >>NP_001025032 (OMIM: 608228) nanos homolog 2 [Homo sapi (138 aa) initn: 351 init1: 271 opt: 284 Z-score: 239.6 bits: 51.2 E(85289): 1.3e-06 Smith-Waterman score: 284; 47.5% identity (76.2% similar) in 80 aa overlap (213-292:62-137) 190 200 210 220 230 240 pF1KE0 EERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVLCP .: ::..: :. .:..: :: ::: :.:: NP_001 TQEIEEPSPGPPLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCP 40 50 60 70 80 90 250 260 270 280 290 pF1KE0 VLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR .::.:.::.:::.::.:::.:::::. : ::.:.. :.... NP_001 ILRHYVCPVCGATGDQAHTLKYCPLNGGQQSLYR---RSGRNSA-GRRVKR 100 110 120 130 >>NP_001092092 (OMIM: 608229) nanos homolog 3 [Homo sapi (192 aa) initn: 303 init1: 255 opt: 263 Z-score: 221.4 bits: 48.3 E(85289): 1.4e-05 Smith-Waterman score: 265; 35.4% identity (54.4% similar) in 147 aa overlap (122-268:10-131) 100 110 120 130 140 150 pF1KE0 GPGALGPALGPPDYDEDDDDDSDEPGSRGRYLGSALELRALELCAGPAEAGLLEERFAEL ::: : .::: :: : : : NP_001 MGTFDLWTDYLGLAHLVRALSGKEGP------ETR---L 10 20 30 160 170 180 190 200 210 pF1KE0 SPFAGRAAAVLLGCAPAAAAAATTTSEATPREERAPAWAAEPRLHAASGAAAARLLKPEL :: : ... : : : .:. . . . .. .. : :: NP_001 SPQP----------EPEPMLEPVSALEPMPAPESVPVPGPKDQKRSLESSPA-----PE- 40 50 60 70 220 230 240 250 260 270 pF1KE0 QVCVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCPLSKVP ..: ::..: :. :.: .:.:: ::::::.:: :.:: :::. . ::: ..:::. NP_001 RLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRERAHTRRFCPLTGQG 80 90 100 110 120 130 280 290 pF1KE0 PPPARPPPRSARDGPPGKKLR NP_001 YTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAGKSEPSPSCSPSMST 140 150 160 170 180 190 >>XP_011526266 (OMIM: 608229) PREDICTED: nanos homolog 3 (196 aa) initn: 287 init1: 255 opt: 263 Z-score: 221.2 bits: 48.3 E(85289): 1.4e-05 Smith-Waterman score: 265; 35.4% identity (54.4% similar) in 147 aa overlap (122-268:10-131) 100 110 120 130 140 150 pF1KE0 GPGALGPALGPPDYDEDDDDDSDEPGSRGRYLGSALELRALELCAGPAEAGLLEERFAEL ::: : .::: :: : : : XP_011 MGTFDLWTDYLGLAHLVRALSGKEGP------ETR---L 10 20 30 160 170 180 190 200 210 pF1KE0 SPFAGRAAAVLLGCAPAAAAAATTTSEATPREERAPAWAAEPRLHAASGAAAARLLKPEL :: : ... : : : .:. . . . .. .. : :: XP_011 SPQP----------EPEPMLEPVSALEPMPAPESVPVPGPKDQKRSLESSPA-----PE- 40 50 60 70 220 230 240 250 260 270 pF1KE0 QVCVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCPLSKVP ..: ::..: :. :.: .:.:: ::::::.:: :.:: :::. . ::: ..:::. XP_011 RLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRERAHTRRFCPLTGQG 80 90 100 110 120 130 280 290 pF1KE0 PPPARPPPRSARDGPPGKKLR XP_011 YTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGACTGFRGAGKSEPSPSCSPSM 140 150 160 170 180 190 292 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:29:42 2016 done: Tue Nov 8 07:29:43 2016 Total Scan time: 7.960 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]