FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5279, 238 aa 1>>>pF1KE5279 238 - 238 aa - 238 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0410+/-0.000343; mu= 7.2947+/- 0.022 mean_var=129.3610+/-25.307, 0's: 0 Z-trim(117.4): 44 B-trim: 0 in 0/58 Lambda= 0.112765 statistics sampled from 29348 (29392) to 29348 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.345), width: 16 Scan time: 5.790 The best scores are: opt bits E(85289) NP_005862 (OMIM: 603519) survival of motor neuron- ( 238) 1544 261.9 7e-70 XP_005269439 (OMIM: 603519) PREDICTED: survival of ( 199) 1301 222.3 4.9e-58 NP_075015 (OMIM: 253400,601627) survival motor neu ( 250) 191 41.8 0.0013 XP_016865275 (OMIM: 253300,253400,253550,271150,60 ( 250) 191 41.8 0.0013 NP_075012 (OMIM: 253300,253400,253550,271150,60035 ( 262) 191 41.8 0.0014 NP_075014 (OMIM: 253400,601627) survival motor neu ( 262) 191 41.8 0.0014 NP_075013 (OMIM: 253400,601627) survival motor neu ( 282) 191 41.8 0.0015 NP_001284644 (OMIM: 253300,253400,253550,271150,60 ( 282) 191 41.8 0.0015 XP_016865276 (OMIM: 253400,601627) PREDICTED: surv ( 290) 191 41.8 0.0015 XP_011541901 (OMIM: 253400,601627) PREDICTED: surv ( 294) 191 41.8 0.0015 XP_011541898 (OMIM: 253300,253400,253550,271150,60 ( 294) 191 41.8 0.0015 NP_059107 (OMIM: 253400,601627) survival motor neu ( 294) 191 41.8 0.0015 NP_000335 (OMIM: 253300,253400,253550,271150,60035 ( 294) 191 41.8 0.0015 >>NP_005862 (OMIM: 603519) survival of motor neuron-rela (238 aa) initn: 1544 init1: 1544 opt: 1544 Z-score: 1375.5 bits: 261.9 E(85289): 7e-70 Smith-Waterman score: 1544; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238) 10 20 30 40 50 60 pF1KE5 MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ 190 200 210 220 230 >>XP_005269439 (OMIM: 603519) PREDICTED: survival of mot (199 aa) initn: 1301 init1: 1301 opt: 1301 Z-score: 1163.0 bits: 222.3 E(85289): 4.9e-58 Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 198 aa overlap (41-238:2-199) 20 30 40 50 60 70 pF1KE5 SYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSFASTQPT :::::::::::::::::::::::::::::: XP_005 MEVIELTKDLLSTQPSETLASSDSFASTQPT 10 20 30 80 90 100 110 120 130 pF1KE5 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRK 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE5 AKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNK 100 110 120 130 140 150 200 210 220 230 pF1KE5 KGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ :::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ 160 170 180 190 >>NP_075015 (OMIM: 253400,601627) survival motor neuron (250 aa) initn: 177 init1: 177 opt: 191 Z-score: 185.6 bits: 41.8 E(85289): 0.0013 Smith-Waterman score: 191; 29.5% identity (63.6% similar) in 129 aa overlap (38-165:58-184) 10 20 30 40 50 60 pF1KE5 QLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSFAST :. :. : . .:.. .:.. .. NP_075 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKK-NKSQKKNTA 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE5 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL-KPVE ..::::::: :.::::: : : : :: . : .....:::: : : .: .:. NP_075 ASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE5 EGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAY : . :..... ..... ... : ... . .:.. :: NP_075 EVANNIEQNAQENENESQVSTDESENSRSPG-NKSDNIKPKSAPWNSFLPPPPPMPGPRL 150 160 170 180 190 200 190 200 210 220 230 pF1KE5 SKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ NP_075 GPGKIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMEMLA 210 220 230 240 250 >>XP_016865275 (OMIM: 253300,253400,253550,271150,600354 (250 aa) initn: 177 init1: 177 opt: 191 Z-score: 185.6 bits: 41.8 E(85289): 0.0013 Smith-Waterman score: 191; 29.5% identity (63.6% similar) in 129 aa overlap (38-165:58-184) 10 20 30 40 50 60 pF1KE5 QLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSFAST :. :. : . .:.. .:.. .. XP_016 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKK-NKSQKKNTA 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE5 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL-KPVE ..::::::: :.::::: : : : :: . : .....:::: : : .: .:. XP_016 ASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE5 EGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAY : . :..... ..... ... : ... . .:.. :: XP_016 EVANNIEQNAQENENESQVSTDESENSRSPG-NKSDNIKPKSAPWNSFLPPPPPMPGPRL 150 160 170 180 190 200 190 200 210 220 230 pF1KE5 SKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ XP_016 GPGKIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMEMLA 210 220 230 240 250 >>NP_075012 (OMIM: 253300,253400,253550,271150,600354) s (262 aa) initn: 177 init1: 177 opt: 191 Z-score: 185.4 bits: 41.8 E(85289): 0.0014 Smith-Waterman score: 191; 29.5% identity (63.6% similar) in 129 aa overlap (38-165:58-184) 10 20 30 40 50 60 pF1KE5 QLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSFAST :. :. : . .:.. .:.. .. NP_075 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKK-NKSQKKNTA 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE5 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL-KPVE ..::::::: :.::::: : : : :: . : .....:::: : : .: .:. NP_075 ASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE5 EGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAY : . :..... ..... ... : ... . .:.. :: NP_075 EVANNIEQNAQENENESQVSTDESENSRSPG-NKSDNIKPKSAPWNSFLPPPPPMPGPRL 150 160 170 180 190 200 190 200 210 220 230 pF1KE5 SKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ NP_075 GPGKIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN 210 220 230 240 250 260 >>NP_075014 (OMIM: 253400,601627) survival motor neuron (262 aa) initn: 177 init1: 177 opt: 191 Z-score: 185.4 bits: 41.8 E(85289): 0.0014 Smith-Waterman score: 191; 29.5% identity (63.6% similar) in 129 aa overlap (38-165:58-184) 10 20 30 40 50 60 pF1KE5 QLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSFAST :. :. : . .:.. .:.. .. NP_075 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKK-NKSQKKNTA 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE5 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL-KPVE ..::::::: :.::::: : : : :: . : .....:::: : : .: .:. NP_075 ASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE5 EGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAY : . :..... ..... ... : ... . .:.. :: NP_075 EVANNIEQNAQENENESQVSTDESENSRSPG-NKSDNIKPKSAPWNSFLPPPPPMPGPRL 150 160 170 180 190 200 190 200 210 220 230 pF1KE5 SKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ NP_075 GPGKIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN 210 220 230 240 250 260 >>NP_075013 (OMIM: 253400,601627) survival motor neuron (282 aa) initn: 177 init1: 177 opt: 191 Z-score: 184.9 bits: 41.8 E(85289): 0.0015 Smith-Waterman score: 191; 29.5% identity (63.6% similar) in 129 aa overlap (38-165:58-184) 10 20 30 40 50 60 pF1KE5 QLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSFAST :. :. : . .:.. .:.. .. NP_075 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKK-NKSQKKNTA 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE5 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL-KPVE ..::::::: :.::::: : : : :: . : .....:::: : : .: .:. NP_075 ASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE5 EGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAY : . :..... ..... ... : ... . .:.. :: NP_075 EVANNIEQNAQENENESQVSTDESENSRSPG-NKSDNIKPKSAPWNSFLPPPPPMPGPRL 150 160 170 180 190 200 190 200 210 220 230 pF1KE5 SKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ NP_075 GPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLI 210 220 230 240 250 260 >>NP_001284644 (OMIM: 253300,253400,253550,271150,600354 (282 aa) initn: 177 init1: 177 opt: 191 Z-score: 184.9 bits: 41.8 E(85289): 0.0015 Smith-Waterman score: 191; 29.5% identity (63.6% similar) in 129 aa overlap (38-165:58-184) 10 20 30 40 50 60 pF1KE5 QLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSFAST :. :. : . .:.. .:.. .. NP_001 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKK-NKSQKKNTA 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE5 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL-KPVE ..::::::: :.::::: : : : :: . : .....:::: : : .: .:. NP_001 ASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE5 EGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAY : . :..... ..... ... : ... . .:.. :: NP_001 EVANNIEQNAQENENESQVSTDESENSRSPG-NKSDNIKPKSAPWNSFLPPPPPMPGPRL 150 160 170 180 190 200 190 200 210 220 230 pF1KE5 SKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ NP_001 GPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLI 210 220 230 240 250 260 >>XP_016865276 (OMIM: 253400,601627) PREDICTED: survival (290 aa) initn: 177 init1: 177 opt: 191 Z-score: 184.7 bits: 41.8 E(85289): 0.0015 Smith-Waterman score: 191; 29.5% identity (63.6% similar) in 129 aa overlap (38-165:58-184) 10 20 30 40 50 60 pF1KE5 QLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSFAST :. :. : . .:.. .:.. .. XP_016 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKK-NKSQKKNTA 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE5 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL-KPVE ..::::::: :.::::: : : : :: . : .....:::: : : .: .:. XP_016 ASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE5 EGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAY : . :..... ..... ... : ... . .:.. :: XP_016 EVANNIEQNAQENENESQVSTDESENSRSPG-NKSDNIKPKSAPWNSFLPPPPPMPGPRL 150 160 170 180 190 200 190 200 210 220 230 pF1KE5 SKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ XP_016 GPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLI 210 220 230 240 250 260 >>XP_011541901 (OMIM: 253400,601627) PREDICTED: survival (294 aa) initn: 177 init1: 177 opt: 191 Z-score: 184.6 bits: 41.8 E(85289): 0.0015 Smith-Waterman score: 191; 29.5% identity (63.6% similar) in 129 aa overlap (38-165:58-184) 10 20 30 40 50 60 pF1KE5 QLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSFAST :. :. : . .:.. .:.. .. XP_011 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKK-NKSQKKNTA 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE5 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL-KPVE ..::::::: :.::::: : : : :: . : .....:::: : : .: .:. XP_011 ASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE5 EGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAY : . :..... ..... ... : ... . .:.. :: XP_011 EVANNIEQNAQENENESQVSTDESENSRSPG-NKSDNIKPKSAPWNSFLPPPPPMPGPRL 150 160 170 180 190 200 190 200 210 220 230 pF1KE5 SKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ XP_011 GPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLI 210 220 230 240 250 260 238 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:21:59 2016 done: Mon Nov 7 23:22:00 2016 Total Scan time: 5.790 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]