FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5342, 273 aa 1>>>pF1KE5342 273 - 273 aa - 273 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8429+/-0.000395; mu= 17.3113+/- 0.024 mean_var=61.7160+/-12.685, 0's: 0 Z-trim(111.0): 21 B-trim: 0 in 0/50 Lambda= 0.163258 statistics sampled from 19464 (19472) to 19464 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.228), width: 16 Scan time: 6.970 The best scores are: opt bits E(85289) NP_057044 (OMIM: 610101) copper homeostasis protei ( 273) 1765 424.4 1.1e-118 >>NP_057044 (OMIM: 610101) copper homeostasis protein cu (273 aa) initn: 1765 init1: 1765 opt: 1765 Z-score: 2251.6 bits: 424.4 E(85289): 1.1e-118 Smith-Waterman score: 1765; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273) 10 20 30 40 50 60 pF1KE5 MKRQGASSERKRARIPSGKAGAANGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MKRQGASSERKRARIPSGKAGAANGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 TPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 EDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 EDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 GLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCSARSTRDSGMKFRNSSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 GLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCSARSTRDSGMKFRNSSV 190 200 210 220 230 240 250 260 270 pF1KE5 AMGASLSCSEYSLKVTDVTKVRTLNAIAKNILV ::::::::::::::::::::::::::::::::: NP_057 AMGASLSCSEYSLKVTDVTKVRTLNAIAKNILV 250 260 270 273 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:56:44 2016 done: Mon Nov 7 23:56:45 2016 Total Scan time: 6.970 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]