FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1695, 202 aa 1>>>pF1KE1695 202 - 202 aa - 202 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2283+/-0.000307; mu= 14.1414+/- 0.019 mean_var=63.4154+/-12.932, 0's: 0 Z-trim(116.7): 16 B-trim: 1688 in 1/54 Lambda= 0.161056 statistics sampled from 28069 (28085) to 28069 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.329), width: 16 Scan time: 6.270 The best scores are: opt bits E(85289) NP_000597 (OMIM: 120930) complement component C8 g ( 202) 1327 316.4 2e-86 NP_001624 (OMIM: 176870) protein AMBP preproprotei ( 352) 227 60.9 2.8e-09 NP_000945 (OMIM: 176803) prostaglandin-H2 D-isomer ( 190) 166 46.6 3.1e-05 NP_005555 (OMIM: 600181) neutrophil gelatinase-ass ( 198) 145 41.7 0.00095 >>NP_000597 (OMIM: 120930) complement component C8 gamma (202 aa) initn: 1327 init1: 1327 opt: 1327 Z-score: 1672.4 bits: 316.4 E(85289): 2e-86 Smith-Waterman score: 1327; 99.5% identity (99.5% similar) in 202 aa overlap (1-202:1-202) 10 20 30 40 50 60 pF1KE1 MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSAC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RFLQEQGHRAEATTLHVAPQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARGAR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: NP_000 RFLQEQGHRAEATTLHVAPQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARDAR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GAVHVVVAETDYQSFAVLYLERAGQLSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GAVHVVVAETDYQSFAVLYLERAGQLSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIF 130 140 150 160 170 180 190 200 pF1KE1 YFPKYGFCEAADQFHVLDEVRR :::::::::::::::::::::: NP_000 YFPKYGFCEAADQFHVLDEVRR 190 200 >>NP_001624 (OMIM: 176870) protein AMBP preproprotein [H (352 aa) initn: 156 init1: 103 opt: 227 Z-score: 287.5 bits: 60.9 E(85289): 2.8e-09 Smith-Waterman score: 227; 26.0% identity (58.3% similar) in 192 aa overlap (9-193:7-193) 10 20 30 40 50 60 pF1KE1 MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSAC :: :: : ... : : .: ..:: . ::. ... : : .:.::.: NP_001 MRSLGALLLLLSACLAVSAGPV-P----TPPDNIQVQENFNISRIYGKWYNLAIGSTC 10 20 30 40 50 70 80 90 100 110 pF1KE1 RFLQEQGHRAEATTLHVAPQGTAMAVS--TFRKLDGICWQVRQLYGDTGVLGRFLLQARG .:.. : ..:: .. .: .: . : :.: .. : : . :.:: . NP_001 PWLKKIMDRMTVSTLVLGEGATEAEISMTSTRWRKGVCEETSGAYEKTDTDGKFLYHKSK 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 ARGAVHVVVAETDYQSFAVLYLERAGQ-----LSVKLYARSLPVSDSVLSGFEQRVQEAH ... :..:.:. .:.. .. .. ...:::.:. . ...:. :. .: . NP_001 WNITMESYVVHTNYDEYAIFLTKKFSRHHGPTITAKLYGRAPQLRETLLQDFRVVAQGVG 120 130 140 150 160 170 180 190 200 pF1KE1 LTEDQIFYFPKYGFCEAADQFHVLDEVRR . ::.:: . : : ..: NP_001 IPEDSIFTMADRGECVPGEQEPEPILIPRVRRAVLPQEEEGSGGGQLVTEVTKKEDSCQL 180 190 200 210 220 230 >>NP_000945 (OMIM: 176803) prostaglandin-H2 D-isomerase (190 aa) initn: 66 init1: 66 opt: 166 Z-score: 214.9 bits: 46.6 E(85289): 3.1e-05 Smith-Waterman score: 166; 26.5% identity (50.8% similar) in 189 aa overlap (7-188:2-186) 10 20 30 40 50 60 pF1KE1 MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSAC :: :: .. . :: . : . .: .:: ::. ..: : :. ....: NP_000 MATHHTLWMGLALLGVLGDLQAAPEAQVS-VQP--NFQQDKFLGRWFSAGLASNS 10 20 30 40 50 70 80 90 100 110 pF1KE1 RFLQEQGHRAEATTLHVAP--QGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARG .:.:. ::: .: .::: . . : .: .: :: . .. NP_000 SWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQ-CETRTMLLQPAGSLGSYSYRSPH 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 ARGAVHVVVAETDYQSFAVLYLERA---GQ--LSVKLYARSLPVSDSVLSGFEQRVQEAH .. : :.::::...:.:: . . :. . ::.:. . : . NP_000 WGSTYSVSVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQG 120 130 140 150 160 170 180 190 200 pF1KE1 LTEDQIFYFPKYGFCEAADQFHVLDEVRR .::: : ..:. : NP_000 FTEDTIVFLPQTDKCMTEQ 180 190 >>NP_005555 (OMIM: 600181) neutrophil gelatinase-associa (198 aa) initn: 86 init1: 86 opt: 145 Z-score: 188.3 bits: 41.7 E(85289): 0.00095 Smith-Waterman score: 145; 23.4% identity (54.7% similar) in 192 aa overlap (2-183:1-189) 10 20 30 40 50 pF1KE1 MLPPGTATL-LTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSA .: : : :.:: : . .: :: :.: . . ::. .:: : : .:.... NP_005 MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGN 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 CRFLQEQGHRAEATTLHVAPQGTAMAVST--FRKLDGICWQVRQLYGDTGVLGRFLL-QA . ... . .:.. . .. :.. ::: : .: . :.: : . NP_005 AILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYW-IRTFVPGCQP-GEFTLGNI 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 RGARGAVH--VVVAETDYQSFAVLYLERAGQ----LSVKLYARSLPVSDSVLSGFEQRVQ .. : . : :. :.:.. :........: ... ::.:. ... . .: . . NP_005 KSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSK 120 130 140 150 160 170 180 190 200 pF1KE1 EAHLTEDQIFYFPKYGFCEAADQFHVLDEVRR : :..: :: NP_005 SLGLPENHIV-FPVPIDQCIDG 180 190 202 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:37:14 2016 done: Sun Nov 6 15:37:15 2016 Total Scan time: 6.270 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]