FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3026, 146 aa 1>>>pF1KE3026 146 - 146 aa - 146 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0202+/-0.000238; mu= 10.0926+/- 0.015 mean_var=100.8415+/-20.807, 0's: 0 Z-trim(124.4): 3 B-trim: 1468 in 1/53 Lambda= 0.127719 statistics sampled from 46151 (46155) to 46151 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.541), width: 16 Scan time: 6.190 The best scores are: opt bits E(85289) NP_001129419 (OMIM: 612693) ubiquitin-related modi ( 146) 1020 196.7 1.1e-50 NP_112176 (OMIM: 612693) ubiquitin-related modifie ( 101) 533 106.8 8.9e-24 NP_001252511 (OMIM: 612693) ubiquitin-related modi ( 63) 424 86.6 6.9e-18 >>NP_001129419 (OMIM: 612693) ubiquitin-related modifier (146 aa) initn: 1020 init1: 1020 opt: 1020 Z-score: 1030.6 bits: 196.7 E(85289): 1.1e-50 Smith-Waterman score: 1020; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146) 10 20 30 40 50 60 pF1KE3 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP 70 80 90 100 110 120 130 140 pF1KE3 TLRLLESPTPGEEGMGSWGHGSTPPS :::::::::::::::::::::::::: NP_001 TLRLLESPTPGEEGMGSWGHGSTPPS 130 140 >>NP_112176 (OMIM: 612693) ubiquitin-related modifier 1 (101 aa) initn: 533 init1: 533 opt: 533 Z-score: 547.8 bits: 106.8 E(85289): 8.9e-24 Smith-Waterman score: 533; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79) 10 20 30 40 50 60 pF1KE3 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP ::::::::::::::::::: NP_112 DSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 70 80 90 100 >>NP_001252511 (OMIM: 612693) ubiquitin-related modifier (63 aa) initn: 424 init1: 424 opt: 424 Z-score: 442.1 bits: 86.6 E(85289): 6.9e-18 Smith-Waterman score: 424; 100.0% identity (100.0% similar) in 63 aa overlap (1-63:1-63) 10 20 30 40 50 60 pF1KE3 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP ::: NP_001 DSV 146 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:42:17 2016 done: Sun Nov 6 15:42:18 2016 Total Scan time: 6.190 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]