FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3092, 262 aa 1>>>pF1KE3092 262 - 262 aa - 262 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7218+/-0.000439; mu= 13.6484+/- 0.027 mean_var=78.1562+/-15.376, 0's: 0 Z-trim(109.9): 23 B-trim: 236 in 2/51 Lambda= 0.145075 statistics sampled from 18166 (18181) to 18166 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.57), E-opt: 0.2 (0.213), width: 16 Scan time: 6.620 The best scores are: opt bits E(85289) NP_620132 (OMIM: 604602) ribosome-recycling factor ( 262) 1637 352.2 5.5e-97 NP_001333270 (OMIM: 604602) ribosome-recycling fac ( 262) 1637 352.2 5.5e-97 NP_001333268 (OMIM: 604602) ribosome-recycling fac ( 283) 1637 352.2 5.8e-97 XP_011517485 (OMIM: 604602) PREDICTED: ribosome-re ( 283) 1637 352.2 5.8e-97 NP_001333272 (OMIM: 604602) ribosome-recycling fac ( 218) 1337 289.4 3.7e-78 NP_954646 (OMIM: 604602) ribosome-recycling factor ( 201) 1167 253.8 1.8e-67 XP_011517487 (OMIM: 604602) PREDICTED: ribosome-re ( 222) 1167 253.8 1.9e-67 NP_001333276 (OMIM: 604602) ribosome-recycling fac ( 171) 1049 229.1 4.3e-60 NP_001333274 (OMIM: 604602) ribosome-recycling fac ( 200) 978 214.2 1.4e-55 XP_016870775 (OMIM: 604602) PREDICTED: ribosome-re ( 221) 978 214.3 1.6e-55 NP_001166983 (OMIM: 604602) ribosome-recycling fac ( 210) 916 201.3 1.2e-51 >>NP_620132 (OMIM: 604602) ribosome-recycling factor, mi (262 aa) initn: 1637 init1: 1637 opt: 1637 Z-score: 1862.3 bits: 352.2 E(85289): 5.5e-97 Smith-Waterman score: 1637; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262) 10 20 30 40 50 60 pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_620 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_620 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_620 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_620 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ 190 200 210 220 230 240 250 260 pF1KE3 MADDTVAELDRHLAVKTKELLG :::::::::::::::::::::: NP_620 MADDTVAELDRHLAVKTKELLG 250 260 >>NP_001333270 (OMIM: 604602) ribosome-recycling factor, (262 aa) initn: 1637 init1: 1637 opt: 1637 Z-score: 1862.3 bits: 352.2 E(85289): 5.5e-97 Smith-Waterman score: 1637; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262) 10 20 30 40 50 60 pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ 190 200 210 220 230 240 250 260 pF1KE3 MADDTVAELDRHLAVKTKELLG :::::::::::::::::::::: NP_001 MADDTVAELDRHLAVKTKELLG 250 260 >>NP_001333268 (OMIM: 604602) ribosome-recycling factor, (283 aa) initn: 1637 init1: 1637 opt: 1637 Z-score: 1861.8 bits: 352.2 E(85289): 5.8e-97 Smith-Waterman score: 1637; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:22-283) 10 20 30 pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH ::::::::::::::::::::::::::::::::::::::: NP_001 MNLNGRWQGVISGCFQGLSSVMALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL 190 200 210 220 230 240 220 230 240 250 260 pF1KE3 KKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKELLG ::::::::::::::::::::::::::::::::::::::::::: NP_001 KKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKELLG 250 260 270 280 >>XP_011517485 (OMIM: 604602) PREDICTED: ribosome-recycl (283 aa) initn: 1637 init1: 1637 opt: 1637 Z-score: 1861.8 bits: 352.2 E(85289): 5.8e-97 Smith-Waterman score: 1637; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:22-283) 10 20 30 pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH ::::::::::::::::::::::::::::::::::::::: XP_011 MNLNGRWQGVISGCFQGLSSVMALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL 190 200 210 220 230 240 220 230 240 250 260 pF1KE3 KKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKELLG ::::::::::::::::::::::::::::::::::::::::::: XP_011 KKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKELLG 250 260 270 280 >>NP_001333272 (OMIM: 604602) ribosome-recycling factor, (218 aa) initn: 1337 init1: 1337 opt: 1337 Z-score: 1524.1 bits: 289.4 E(85289): 3.7e-78 Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 218 aa overlap (45-262:1-218) 20 30 40 50 60 70 pF1KE3 FRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNI :::::::::::::::::::::::::::::: NP_001 MAYSAVPVRHFATKKAKAKGKGQSQTRVNI 10 20 30 80 90 100 110 120 130 pF1KE3 NAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIS 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 QISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLV 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE3 KLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLA 160 170 180 190 200 210 260 pF1KE3 VKTKELLG :::::::: NP_001 VKTKELLG >>NP_954646 (OMIM: 604602) ribosome-recycling factor, mi (201 aa) initn: 1245 init1: 1167 opt: 1167 Z-score: 1332.3 bits: 253.8 E(85289): 1.8e-67 Smith-Waterman score: 1167; 98.4% identity (99.5% similar) in 187 aa overlap (1-187:1-187) 10 20 30 40 50 60 pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ :::: .. NP_954 PIPQSAKWPMTQWQNWTGIWQ 190 200 >>XP_011517487 (OMIM: 604602) PREDICTED: ribosome-recycl (222 aa) initn: 1245 init1: 1167 opt: 1167 Z-score: 1331.7 bits: 253.8 E(85289): 1.9e-67 Smith-Waterman score: 1167; 98.4% identity (99.5% similar) in 187 aa overlap (1-187:22-208) 10 20 30 pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH ::::::::::::::::::::::::::::::::::::::: XP_011 MNLNGRWQGVISGCFQGLSSVMALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL ::::::::::::::::::::::::: .. XP_011 KAIRESGMNLNPEVEGTLIRVPIPQSAKWPMTQWQNWTGIWQ 190 200 210 220 >>NP_001333276 (OMIM: 604602) ribosome-recycling factor, (171 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 1199.9 bits: 229.1 E(85289): 4.3e-60 Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 171 aa overlap (92-262:1-171) 70 80 90 100 110 120 pF1KE3 AKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAV :::::::::::::::::::::::::::::: NP_001 MKSVIEALKDNFNKTLNIRTSPGSLDKIAV 10 20 30 130 140 150 160 170 180 pF1KE3 VTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVP 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE3 IPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQM 100 110 120 130 140 150 250 260 pF1KE3 ADDTVAELDRHLAVKTKELLG ::::::::::::::::::::: NP_001 ADDTVAELDRHLAVKTKELLG 160 170 >>NP_001333274 (OMIM: 604602) ribosome-recycling factor, (200 aa) initn: 1045 init1: 967 opt: 978 Z-score: 1118.6 bits: 214.2 E(85289): 1.4e-55 Smith-Waterman score: 978; 94.0% identity (95.8% similar) in 166 aa overlap (1-166:1-166) 10 20 30 40 50 60 pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV ::::::::::::::::::::::::::::::::: . : . :.: NP_001 VVTADGKLALNQISQISMKSPQLILVNMASFPESNQRAQRNAGETGQTEHQQGQRLFTEG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ NP_001 SHQLNEQAEEIQGYSLRGHH 190 200 >>XP_016870775 (OMIM: 604602) PREDICTED: ribosome-recycl (221 aa) initn: 1045 init1: 967 opt: 978 Z-score: 1117.9 bits: 214.3 E(85289): 1.6e-55 Smith-Waterman score: 978; 94.0% identity (95.8% similar) in 166 aa overlap (1-166:22-187) 10 20 30 pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH ::::::::::::::::::::::::::::::::::::::: XP_016 MNLNGRWQGVISGCFQGLSSVMALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI :::::::::::::::::::::::::::::::::::::::::::::::::::::: . : XP_016 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPESNQRAQ 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL . :.: XP_016 RNAGETGQTEHQQGQRLFTEGSHQLNEQAEEIQGYSLRGHH 190 200 210 220 262 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:13:27 2016 done: Sun Nov 6 05:13:28 2016 Total Scan time: 6.620 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]