FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1672, 189 aa 1>>>pF1KE1672 189 - 189 aa - 189 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9802+/-0.0008; mu= 14.5525+/- 0.048 mean_var=59.1553+/-11.747, 0's: 0 Z-trim(106.9): 22 B-trim: 36 in 1/48 Lambda= 0.166754 statistics sampled from 9228 (9247) to 9228 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.284), width: 16 Scan time: 1.850 The best scores are: opt bits E(32554) CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1258 310.6 3.6e-85 CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1074 266.4 7.6e-72 CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1052 261.1 3e-70 CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 1043 258.9 1.3e-69 CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 1042 258.7 1.6e-69 CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 1037 257.5 3.6e-69 CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1007 250.3 5.4e-67 CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1005 249.8 7.5e-67 CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1000 248.6 1.7e-66 CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 984 244.7 2.5e-65 CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 975 242.6 1.1e-64 CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 964 239.9 7e-64 CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 959 238.7 1.6e-63 CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 683 172.3 1.6e-43 CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 345 91.0 5.1e-19 CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 308 82.1 2.2e-16 >>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa) initn: 1258 init1: 1258 opt: 1258 Z-score: 1642.6 bits: 310.6 E(32554): 3.6e-85 Smith-Waterman score: 1258; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: CCDS65 LQERLRRKE >>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa) initn: 1074 init1: 1074 opt: 1074 Z-score: 1403.3 bits: 266.4 E(32554): 7.6e-72 Smith-Waterman score: 1074; 86.2% identity (93.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR :::::.::::::::.::: ::: :::::::::..:::.:..::: ::: :::::::::: CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE ::::::::::::::.:::::::.::::::::::::::..::: ::::.:::::::::::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN ::.:::: : ::::: ::::.:::::::::::::::::::::::::::::::::: : : CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: CCDS65 LQERLRRKE >>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa) initn: 1104 init1: 1052 opt: 1052 Z-score: 1374.7 bits: 261.1 E(32554): 3e-70 Smith-Waterman score: 1052; 83.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR :::::::.:::::::::::::: :.: :::::..:::.::.::::::: ::::::::::. CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE ::::::::::::::.:::::::..::::::::::.::.:::: ::.:.: ::.::.:::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.::: : ::::::::::::.:::::::::: :::::::::::::::::::.: : : CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. CCDS65 LQKRLRRKD >>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa) initn: 1041 init1: 660 opt: 1043 Z-score: 1363.1 bits: 258.9 E(32554): 1.3e-69 Smith-Waterman score: 1043; 85.7% identity (91.0% similar) in 189 aa overlap (1-189:1-188) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR ::: ::::.::.:::::::::. :::::::::: :::.::::::::::::::::::::: CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE :::::: ::::::::.: ::::.::: ::::::::::.:::: ::::.:::::::::::: CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.: : : ::::.:::::::::::::::::: ::::::::::::::::::::: : : CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 120 130 140 150 160 170 pF1KE1 LQERLRRKE ::: :: :: CCDS65 LQESLRSKE 180 >>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa) initn: 1042 init1: 1042 opt: 1042 Z-score: 1361.7 bits: 258.7 E(32554): 1.6e-69 Smith-Waterman score: 1042; 85.2% identity (90.5% similar) in 189 aa overlap (1-189:2-190) 10 20 30 40 50 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDF :: ::::::::::::::::::: ::::.:::: .:::.:::::: ::: ::: ::::: CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 RFPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDL :::::::::::::: :::::::.::: ::::.:::::.:::: ::::. :::::::::: CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 EACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSR ::::::: :: ::::: ::::::.:::.::::::::::::::::::::::::::.: : CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 180 pF1KE1 NLQERLRRKE :::::::::: CCDS65 NLQERLRRKE 190 >>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa) initn: 1037 init1: 1037 opt: 1037 Z-score: 1355.2 bits: 257.5 E(32554): 3.6e-69 Smith-Waterman score: 1037; 84.7% identity (90.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR :: ::::::.:::::::::::: ::::.:::: .:::.:::::: ::: ::: ::::: CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE :::::::::::::: :::::::.::: ::::.:::::.:::: ::::. ::::::::::: CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::::: :: ::::: ::::::.:::.::::::::::::::::::::::::::.: : : CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: CCDS65 LQERLRRKE >>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa) initn: 1022 init1: 1007 opt: 1007 Z-score: 1316.2 bits: 250.3 E(32554): 5.4e-67 Smith-Waterman score: 1007; 81.5% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE ::.:::::.:::::.:::::::.::::::::::.:::.::.. ::.:. ::::::::::: CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.::: : :::::::::::::::::::::::::::::::::::::::::::.: : : CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. CCDS64 LQKRLRRKD >>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa) initn: 1020 init1: 1005 opt: 1005 Z-score: 1313.6 bits: 249.8 E(32554): 7.5e-67 Smith-Waterman score: 1005; 81.0% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR ::: :.::::..::: :: ::: ::::::::::.::...::.:: ::: ::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE .:::::::::::::.:::::::.::::::::::.:::.::.. ::.:. ::::::::::: CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.::: : ::::::::::::::::::::::: :.:::::::::::::::::.: : : CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. CCDS64 LQKRLRRKD >>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa) initn: 1000 init1: 1000 opt: 1000 Z-score: 1307.1 bits: 248.6 E(32554): 1.7e-66 Smith-Waterman score: 1000; 81.5% identity (91.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE ::::::::::::::.:::::::.::::::::::::::..:.. ::.:. ::: ::::::: CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.::: : ::::: ::::::.:::::::::::::::::::::::::::::::: :. CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE1 LQERLRRKE .:::::::: CCDS64 FQERLRRKE >>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa) initn: 999 init1: 984 opt: 984 Z-score: 1286.3 bits: 244.7 E(32554): 2.5e-65 Smith-Waterman score: 984; 79.9% identity (92.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::::: CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE .::::::::::::..:::::::.::::::::::.:::.::.. ::.:. ::::::::.:: CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.::: . :::::::::::::::::::::::::::::::::::::::::::.: : : CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::. ::::. CCDS65 LQKILRRKD 189 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:49:19 2016 done: Sun Nov 6 15:49:20 2016 Total Scan time: 1.850 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]