FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9520, 445 aa 1>>>pF1KE9520 445 - 445 aa - 445 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9210+/-0.000715; mu= 11.7163+/- 0.043 mean_var=126.5877+/-25.286, 0's: 0 Z-trim(114.5): 4 B-trim: 2 in 1/51 Lambda= 0.113993 statistics sampled from 15055 (15058) to 15055 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.463), width: 16 Scan time: 3.940 The best scores are: opt bits E(32554) CCDS6423.1 SLC52A2 gene_id:79581|Hs108|chr8 ( 445) 2976 500.1 1.8e-141 CCDS11066.1 SLC52A1 gene_id:55065|Hs108|chr17 ( 448) 2541 428.6 6.3e-120 CCDS13007.1 SLC52A3 gene_id:113278|Hs108|chr20 ( 469) 545 100.3 4.3e-21 >>CCDS6423.1 SLC52A2 gene_id:79581|Hs108|chr8 (445 aa) initn: 2976 init1: 2976 opt: 2976 Z-score: 2653.2 bits: 500.1 E(32554): 1.8e-141 Smith-Waterman score: 2976; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445) 10 20 30 40 50 60 pF1KE9 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 EEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 EEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 SCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 SCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE9 PCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 PCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGA 370 380 390 400 410 420 430 440 pF1KE9 VAMFPPTSIYHVFHSRKDCADPCDS ::::::::::::::::::::::::: CCDS64 VAMFPPTSIYHVFHSRKDCADPCDS 430 440 >>CCDS11066.1 SLC52A1 gene_id:55065|Hs108|chr17 (448 aa) initn: 1406 init1: 1406 opt: 2541 Z-score: 2266.5 bits: 428.6 E(32554): 6.3e-120 Smith-Waterman score: 2541; 86.5% identity (93.9% similar) in 446 aa overlap (1-443:1-446) 10 20 30 40 50 60 pF1KE9 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL ::::: .: ::::::::::::::::::::::::::::::.::::::::::.::.:::::: CCDS11 MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV :::::::::.::::: :::::.:::::..::::::: ::::::::::::::::::.::.: CCDS11 GLLVVTLWRQLAPGKGEQVPIQVVQVLSVVGTALLAPLWHHVAPVAGQLHSVAFLTLALV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT ::.:::.:::::::::::::: :::::::::::::::::::::::::::::::::: ::: CCDS11 LAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPTNGT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA :::::: :::::::::::::::::.:::::.::::::: ::: :: : ::.:.::: CCDS11 SGPPLDFPERFPASTFFWALTALLVTSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGA 190 200 210 220 230 240 250 260 270 280 290 pF1KE9 EEEV---EESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAV ::: ::. :::::::::::: :::::.:.::.::..: ::::.: :.:.::::::.: CCDS11 EEEEKEEEEALPLQEPPSQAAGTIPGPDPEAHQLFSAHGAFLLGLMAFTSAVTNGVLPSV 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE9 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALA :::::::::::::::::::::::::::::::::::::::::: ::::::.. :.:::::: CCDS11 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALA 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE9 VLSPCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL .::::::::::.:::::::::::::: ::::::::::::::::::::::::::::::::: CCDS11 ILSPCPPLVGTTAGVVLVVLSWVLCLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL 370 380 390 400 410 420 420 430 440 pF1KE9 LGAVAMFPPTSIYHVFHSRKDCADPCDS ::: ::::::::::::.:::::.::: CCDS11 LGAGAMFPPTSIYHVFQSRKDCVDPCGP 430 440 >>CCDS13007.1 SLC52A3 gene_id:113278|Hs108|chr20 (469 aa) initn: 1086 init1: 512 opt: 545 Z-score: 492.2 bits: 100.3 E(32554): 4.3e-21 Smith-Waterman score: 1049; 43.2% identity (65.3% similar) in 472 aa overlap (11-443:4-467) 10 20 30 40 50 60 pF1KE9 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL : :::: .::::::...::.:::::..: :::::: ::::..:.. :.:. CCDS13 MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANI 10 20 30 40 50 70 80 90 100 110 pF1KE9 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTA---LLASLWHHVAPVAGQLHSVAFLAL : :.::: ... :. .::: . .:: :::. ..: ::. .. : ::.:::.: CCDS13 GPLLVTLLHHFRPSCLSEVPI-IFTLLG-VGTVTCIIFAFLWNMTSWVLDGHHSIAFLVL 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 AFVLALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLEC----- .: :::. :.:.::::::.:.:: .: .::.:.:::.::: ..::.:: : : CCDS13 TFFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTE 120 130 140 150 160 170 180 190 200 pF1KE9 -----P-PAP--------------INGTPG--PPLDFLE-RF-PAS----TFFWALTALL : :.: ... :: ::. :: :. :: .:: :. .. CCDS13 ISDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMM 180 190 200 210 220 230 210 220 230 240 250 260 pF1KE9 VASAAAFQGLLLLLPP---PPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTT . .:: ..: : :: :.. . . . .:: . . ::. : CCDS13 ACCLVAF--FVLQRQPRCWEASVED-LLNDQVTLHSIRPREENDLGPAGTVDSSQGQGYL 240 250 260 270 280 270 280 290 300 310 320 pF1KE9 PGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSFSCLPYGRLAYHLAVVLGSAAN . :: :. : . :.: .::::::.::.::..::: :: .:::::..:. .:: CCDS13 ---EEKAAPCCPAHLAFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVAN 290 300 310 320 330 340 330 340 350 360 370 380 pF1KE9 PLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLSPCPPLVGTSAGVVLVVLSWVL ::: ...: . ::: :: ::.::. ::: ::.::.:::: : : .: ::.: :::: CCDS13 PLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVL 350 360 370 380 390 400 390 400 410 420 430 440 pF1KE9 CLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAVAMFPPTSIYHVFHSRKDCAD : .::::: . .:. .: ::: :.:.:.::::::. ::: ... ..: : : CCDS13 FSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNL 410 420 430 440 450 460 pF1KE9 PCDS : CCDS13 HCPA 445 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:32:27 2016 done: Sun Nov 6 06:32:28 2016 Total Scan time: 3.940 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]