FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6175, 111 aa 1>>>pF1KE6175 111 - 111 aa - 111 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2016+/-0.000291; mu= 10.8156+/- 0.018 mean_var=68.8401+/-13.884, 0's: 0 Z-trim(117.4): 3 B-trim: 0 in 0/54 Lambda= 0.154580 statistics sampled from 29376 (29379) to 29376 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.344), width: 16 Scan time: 3.780 The best scores are: opt bits E(85289) NP_006285 (OMIM: 191330,615158) cytochrome b-c1 co ( 111) 752 175.8 1.3e-44 NP_001241681 (OMIM: 191330,615158) cytochrome b-c1 ( 140) 584 138.4 2.9e-33 NP_001186904 (OMIM: 191330,615158) cytochrome b-c1 ( 79) 531 126.4 6.6e-30 >>NP_006285 (OMIM: 191330,615158) cytochrome b-c1 comple (111 aa) initn: 752 init1: 752 opt: 752 Z-score: 922.1 bits: 175.8 E(85289): 1.3e-44 Smith-Waterman score: 752; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111) 10 20 30 40 50 60 pF1KE6 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK 70 80 90 100 110 >>NP_001241681 (OMIM: 191330,615158) cytochrome b-c1 com (140 aa) initn: 584 init1: 584 opt: 584 Z-score: 718.2 bits: 138.4 E(85289): 2.9e-33 Smith-Waterman score: 584; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86) 10 20 30 40 50 60 pF1KE6 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK :::::::::::::::::::::::::: NP_001 FRIKRALDLNLKHQILPKEQWTKYEEVFAVPALHSASYLDEKISPLSVPPDPKKSFCEAN 70 80 90 100 110 120 >>NP_001186904 (OMIM: 191330,615158) cytochrome b-c1 com (79 aa) initn: 531 init1: 531 opt: 531 Z-score: 657.9 bits: 126.4 E(85289): 6.6e-30 Smith-Waterman score: 531; 100.0% identity (100.0% similar) in 79 aa overlap (33-111:1-79) 10 20 30 40 50 60 pF1KE6 GKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFR :::::::::::::::::::::::::::::: NP_001 MRDDTIYEDEDVKEAIRRLPENLYNDRMFR 10 20 30 70 80 90 100 110 pF1KE6 IKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK 40 50 60 70 111 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:05:25 2016 done: Tue Nov 8 10:05:26 2016 Total Scan time: 3.780 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]