Result of FASTA (ccds) for pFN21AE6175
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6175, 111 aa
  1>>>pF1KE6175 111 - 111 aa - 111 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2842+/-0.000649; mu= 10.3498+/- 0.039
 mean_var=65.1248+/-12.957, 0's: 0 Z-trim(110.4): 8  B-trim: 0 in 0/51
 Lambda= 0.158928
 statistics sampled from 11592 (11594) to 11592 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.356), width:  16
 Scan time:  1.110

The best scores are:                                      opt bits E(32554)
CCDS6269.1 UQCRB gene_id:7381|Hs108|chr8           ( 111)  752 180.3 2.2e-46
CCDS59107.1 UQCRB gene_id:7381|Hs108|chr8          ( 140)  584 141.8 1.1e-34


>>CCDS6269.1 UQCRB gene_id:7381|Hs108|chr8                (111 aa)
 initn: 752 init1: 752 opt: 752  Z-score: 946.2  bits: 180.3 E(32554): 2.2e-46
Smith-Waterman score: 752; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)

               10        20        30        40        50        60
pF1KE6 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM
               10        20        30        40        50        60

               70        80        90       100       110 
pF1KE6 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK
               70        80        90       100       110 

>>CCDS59107.1 UQCRB gene_id:7381|Hs108|chr8               (140 aa)
 initn: 584 init1: 584 opt: 584  Z-score: 736.5  bits: 141.8 E(32554): 1.1e-34
Smith-Waterman score: 584; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86)

               10        20        30        40        50        60
pF1KE6 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE6 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK         
       ::::::::::::::::::::::::::                                  
CCDS59 FRIKRALDLNLKHQILPKEQWTKYEEVFAVPALHSASYLDEKISPLSVPPDPKKSFCEAN
               70        80        90       100       110       120




111 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:05:25 2016 done: Tue Nov  8 10:05:25 2016
 Total Scan time:  1.110 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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