FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1620, 132 aa 1>>>pF1KE1620 132 - 132 aa - 132 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7582+/-0.000444; mu= 13.3987+/- 0.027 mean_var=56.6033+/-11.208, 0's: 0 Z-trim(109.7): 41 B-trim: 506 in 1/49 Lambda= 0.170472 statistics sampled from 17939 (17980) to 17939 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.211), width: 16 Scan time: 4.420 The best scores are: opt bits E(85289) NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 850 217.2 6.1e-57 NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 587 152.5 1.8e-37 NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 563 146.6 1.1e-35 XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 543 141.7 3.2e-34 NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 505 132.4 2.1e-31 NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 480 126.3 1.8e-29 NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 468 123.3 1.2e-28 NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 433 114.7 4.9e-26 NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 402 107.0 8.8e-24 NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 350 94.2 5e-20 NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 307 83.7 9.8e-17 NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 295 80.7 7.6e-16 NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 280 77.0 1e-14 NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 281 77.4 1.1e-14 NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 260 72.1 3e-13 NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 260 72.1 3e-13 XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 260 72.1 3e-13 NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 253 70.4 9.7e-13 NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 219 62.0 3.2e-10 NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 217 61.6 5e-10 NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 215 61.1 7.2e-10 XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 164 48.5 3.6e-06 NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128) 134 41.1 0.00061 NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177) 134 41.2 0.00079 NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177) 134 41.2 0.00079 NP_001316383 (OMIM: 611866) retinol-binding protei ( 86) 117 36.8 0.008 >>NP_001433 (OMIM: 600434) fatty acid-binding protein, a (132 aa) initn: 850 init1: 850 opt: 850 Z-score: 1143.2 bits: 217.2 E(85289): 6.1e-57 Smith-Waterman score: 850; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM 70 80 90 100 110 120 130 pF1KE1 KGVTSTRVYERA :::::::::::: NP_001 KGVTSTRVYERA 130 >>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa) initn: 585 init1: 571 opt: 587 Z-score: 793.7 bits: 152.5 E(85289): 1.8e-37 Smith-Waterman score: 587; 67.2% identity (88.5% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN : . :.:::::::::::::::: .:::.::::....:::..::: .::.:::..:::::: NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM ::::: :::::.:.:::.::.:: .::. : : .::.:::: :::::: . :.:.:: : NP_002 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM 70 80 90 100 110 120 130 pF1KE1 KGVTSTRVYERA :::. ::.::. NP_002 KGVVCTRIYEKV 130 >>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa) initn: 557 init1: 557 opt: 563 Z-score: 761.7 bits: 146.6 E(85289): 1.1e-35 Smith-Waterman score: 563; 64.9% identity (84.7% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN : :::.::::::.:.::::::: .:::::::.::.:.::. :: :::..:.:..::::: NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM ::::: :: ::::.::::::::: .::::: :::.:::::. ::. :. : ::.. . NP_004 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH 70 80 90 100 110 120 130 pF1KE1 KGVTSTRVYERA .. ::.::. NP_004 GTAVCTRTYEKEA 130 >>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind (126 aa) initn: 537 init1: 537 opt: 543 Z-score: 735.5 bits: 141.7 E(85289): 3.2e-34 Smith-Waterman score: 543; 69.8% identity (87.9% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN : :::.::::::.:.::::::: .:::::::.::.:.::. :: :::..:.:..::::: XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM ::::: :: ::::.::::::::: .::::: :::.:::::. ::. :. : ::.. XP_011 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILMEKL 70 80 90 100 110 120 130 pF1KE1 KGVTSTRVYERA XP_011 QLRNVK >>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa) initn: 533 init1: 497 opt: 505 Z-score: 684.7 bits: 132.4 E(85289): 2.1e-31 Smith-Waterman score: 505; 56.8% identity (85.6% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN : .:: .::::..:.:::.::: .:::::::.:....::..::: .:: ..:.. ::::: NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM ::::: ::.::::.:::::. ::...::: :::.:::::: :.. :. .: :.:. .. NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF 70 80 90 100 110 120 130 pF1KE1 KGVTSTRVYERA :...: ::.: NP_001 GDVVAVRHYEKA 130 >>NP_001305968 (OMIM: 602965) fatty acid-binding protein (166 aa) initn: 490 init1: 472 opt: 480 Z-score: 650.0 bits: 126.3 E(85289): 1.8e-29 Smith-Waterman score: 480; 60.3% identity (87.9% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN : .:: .::::..:.:::.::: .:::::::.:....::..::: .:: ..:.. ::::: NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM ::::: ::.::::.:::::. ::...::: :::.:::::: :.. :. .: :.:. NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND 70 80 90 100 110 120 130 pF1KE1 KGVTSTRVYERA NP_001 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM 130 140 150 160 >>NP_001435 (OMIM: 605168) fatty acid-binding protein, e (135 aa) initn: 467 init1: 443 opt: 468 Z-score: 635.4 bits: 123.3 E(85289): 1.2e-28 Smith-Waterman score: 468; 55.2% identity (85.6% similar) in 125 aa overlap (7-131:9-133) 10 20 30 40 50 pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTF : :.::.:..::.::::.:::.: ::...::::. ::. .: .:::.:::. NP_001 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 KNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVEC :.:..: ::..:.:.::: ::.... .. :.::. :.:::: .:: :: .: :::::: NP_001 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC 70 80 90 100 110 120 120 130 pF1KE1 VMKGVTSTRVYERA ::..:: ::.::. NP_001 VMNNVTCTRIYEKVE 130 >>NP_001307925 (OMIM: 134651) fatty acid-binding protein (144 aa) initn: 549 init1: 433 opt: 433 Z-score: 588.4 bits: 114.7 E(85289): 4.9e-26 Smith-Waterman score: 531; 59.9% identity (78.2% similar) in 142 aa overlap (1-131:1-142) 10 20 30 40 pF1KE1 MCDAFVGTWKLVSSENFDDYMKEV-----------GVGFATRKVAGMAKPNMIISVNGDV : :::.::::::.:.::::::: . :::::::.::.:.::. :: :::. NP_001 MVDAFLGTWKLVDSKNFDDYMKSLAHILITFPLPSGVGFATRQVASMTKPTTIIEKNGDI 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 ITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKR .:.:..:::::::::: :: ::::.::::::::: .::::: :::.:::::. ::. :. NP_001 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVREL 70 80 90 100 110 120 110 120 130 pF1KE1 EDDKLVVECVMKGVTSTRVYERA : ::.. . .. ::.::. NP_001 IDGKLILTLTHGTAVCTRTYEKEA 130 140 >>NP_001305971 (OMIM: 602965) fatty acid-binding protein (128 aa) initn: 436 init1: 400 opt: 402 Z-score: 548.0 bits: 107.0 E(85289): 8.8e-24 Smith-Waterman score: 402; 50.8% identity (80.2% similar) in 126 aa overlap (9-132:8-128) 10 20 30 40 50 pF1KE1 MCDAFVGTWK--LVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTF :. :... : .. :::::::.:....::..::: .:: ..:.. ::: NP_001 MQLKEKDWRSALIKTAN-----QQKGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 KNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVEC ::::::: ::.::::.:::::. ::...::: :::.:::::: :.. :. .: :.:. NP_001 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL 60 70 80 90 100 110 120 130 pF1KE1 VMKGVTSTRVYERA .. :...: ::.: NP_001 TFGDVVAVRHYEKA 120 >>NP_001305970 (OMIM: 602965) fatty acid-binding protein (97 aa) initn: 357 init1: 342 opt: 350 Z-score: 480.6 bits: 94.2 E(85289): 5e-20 Smith-Waterman score: 350; 63.4% identity (90.2% similar) in 82 aa overlap (1-82:1-82) 10 20 30 40 50 60 pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN : .:: .::::..:.:::.::: .:::::::.:....::..::: .:: ..:.. ::::: NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM ::::: ::.::::.:::::. : NP_001 TEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE 70 80 90 132 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:06:29 2016 done: Sun Nov 6 16:06:30 2016 Total Scan time: 4.420 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]