FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1683, 196 aa
  1>>>pF1KE1683 196 - 196 aa - 196 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7623+/-0.000658; mu= 4.3712+/- 0.040
 mean_var=171.8526+/-34.323, 0's: 0 Z-trim(117.9): 4  B-trim: 0 in 0/52
 Lambda= 0.097835
 statistics sampled from 18678 (18681) to 18678 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.574), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS6188.1 CRH gene_id:1392|Hs108|chr8             ( 196) 1312 195.6 1.6e-50


>>CCDS6188.1 CRH gene_id:1392|Hs108|chr8                  (196 aa)
 initn: 1312 init1: 1312 opt: 1312  Z-score: 1020.6  bits: 195.6 E(32554): 1.6e-50
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
              130       140       150       160       170       180

              190      
pF1KE1 AQQAHSNRKLMEIIGK
       ::::::::::::::::
CCDS61 AQQAHSNRKLMEIIGK
              190      




196 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:07:28 2016 done: Sun Nov  6 16:07:28 2016
 Total Scan time:  2.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]