FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1773, 280 aa 1>>>pF1KE1773 280 - 280 aa - 280 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7826+/-0.000873; mu= 12.4183+/- 0.052 mean_var=64.6473+/-13.517, 0's: 0 Z-trim(106.3): 17 B-trim: 443 in 1/50 Lambda= 0.159514 statistics sampled from 8903 (8916) to 8903 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.274), width: 16 Scan time: 2.160 The best scores are: opt bits E(32554) CCDS5933.1 XRCC2 gene_id:7516|Hs108|chr7 ( 280) 1872 439.4 1.4e-123 >>CCDS5933.1 XRCC2 gene_id:7516|Hs108|chr7 (280 aa) initn: 1872 init1: 1872 opt: 1872 Z-score: 2332.4 bits: 439.4 E(32554): 1.4e-123 Smith-Waterman score: 1872; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280) 10 20 30 40 50 60 pF1KE1 MCSAFHRAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 MCSAFHRAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSSEEIIKYCLGRFFLVYC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 LTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSSEEIIKYCLGRFFLVYC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQCL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 EKLVNDYRLVLFATTQTIMQKASSSSEEPSHASRRLCDVDIDYRPYLCKAWQQLVKHRMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 EKLVNDYRLVLFATTQTIMQKASSSSEEPSHASRRLCDVDIDYRPYLCKAWQQLVKHRMF 190 200 210 220 230 240 250 260 270 280 pF1KE1 FSKQDDSQSSNQFSLVSRCLKSNSLKKHFFIIGESGVEFC :::::::::::::::::::::::::::::::::::::::: CCDS59 FSKQDDSQSSNQFSLVSRCLKSNSLKKHFFIIGESGVEFC 250 260 270 280 280 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:13:41 2016 done: Sun Nov 6 16:13:42 2016 Total Scan time: 2.160 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]