FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6179, 119 aa 1>>>pF1KE6179 119 - 119 aa - 119 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9811+/-0.000355; mu= 11.4843+/- 0.022 mean_var=50.5433+/- 9.762, 0's: 0 Z-trim(112.9): 18 B-trim: 22 in 1/52 Lambda= 0.180402 statistics sampled from 21937 (21939) to 21937 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.257), width: 16 Scan time: 3.350 The best scores are: opt bits E(85289) NP_004222 (OMIM: 607160) V-type proton ATPase subu ( 119) 771 208.1 2.8e-54 NP_001185838 (OMIM: 607160) V-type proton ATPase s ( 147) 441 122.2 2.4e-28 >>NP_004222 (OMIM: 607160) V-type proton ATPase subunit (119 aa) initn: 771 init1: 771 opt: 771 Z-score: 1095.4 bits: 208.1 E(85289): 2.8e-54 Smith-Waterman score: 771; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119) 10 20 30 40 50 60 pF1KE6 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 IGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDLR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 IGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDLR 70 80 90 100 110 >>NP_001185838 (OMIM: 607160) V-type proton ATPase subun (147 aa) initn: 437 init1: 437 opt: 441 Z-score: 629.8 bits: 122.2 E(85289): 2.4e-28 Smith-Waterman score: 705; 81.0% identity (81.0% similar) in 147 aa overlap (1-119:1-147) 10 20 30 40 50 pF1KE6 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR------- ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRSLGSLPG 10 20 30 40 50 60 60 70 80 90 pF1KE6 ---------------------QFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIP ::::::::::::::::::::::::::::::::::::::: NP_001 SVVEANPNQRDPPLWDEIDSRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIP 70 80 90 100 110 120 100 110 pF1KE6 SKEHPYDAAKDSILRRARGMFTAEDLR ::::::::::::::::::::::::::: NP_001 SKEHPYDAAKDSILRRARGMFTAEDLR 130 140 119 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:07:47 2016 done: Tue Nov 8 10:07:47 2016 Total Scan time: 3.350 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]