FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9524, 348 aa 1>>>pF1KE9524 348 - 348 aa - 348 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6193+/-0.000481; mu= 20.3893+/- 0.030 mean_var=114.8959+/-30.449, 0's: 0 Z-trim(111.2): 526 B-trim: 1140 in 1/49 Lambda= 0.119653 statistics sampled from 19078 (19752) to 19078 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.232), width: 16 Scan time: 6.760 The best scores are: opt bits E(85289) NP_001699 (OMIM: 190900,613522) short-wave-sensiti ( 348) 2387 423.7 3e-118 NP_000530 (OMIM: 136880,180380,610445,613731) rhod ( 348) 1085 198.9 1.3e-50 NP_000504 (OMIM: 300821,303700,303800) medium-wave ( 364) 1033 190.0 6.9e-48 NP_064445 (OMIM: 300822,303700,303900) long-wave-s ( 364) 1027 189.0 1.4e-47 NP_055137 (OMIM: 606695) opsin-3 [Homo sapiens] ( 402) 533 103.7 7e-22 NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] ( 354) 402 81.0 4.2e-15 XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 iso ( 408) 402 81.1 4.5e-15 NP_150598 (OMIM: 606665) melanopsin isoform 1 [Hom ( 478) 395 80.0 1.1e-14 XP_016872445 (OMIM: 606665) PREDICTED: melanopsin ( 528) 395 80.1 1.2e-14 NP_006574 (OMIM: 605224) visual pigment-like recep ( 337) 390 78.9 1.7e-14 NP_001050 (OMIM: 162332,614840) neuromedin-K recep ( 465) 390 79.2 2.1e-14 XP_016865900 (OMIM: 609042) PREDICTED: opsin-5 iso ( 298) 377 76.6 7.6e-14 NP_001049 (OMIM: 162323) substance-P receptor isof ( 407) 377 76.8 9e-14 NP_001025186 (OMIM: 606665) melanopsin isoform 2 [ ( 489) 377 76.9 1e-13 XP_016872444 (OMIM: 606665) PREDICTED: melanopsin ( 539) 377 77.0 1.1e-13 XP_016872446 (OMIM: 606665) PREDICTED: melanopsin ( 405) 373 76.1 1.5e-13 NP_056542 (OMIM: 162323) substance-P receptor isof ( 311) 368 75.1 2.3e-13 NP_001048 (OMIM: 162321) substance-K receptor [Hom ( 398) 360 73.9 6.8e-13 NP_000903 (OMIM: 165196) kappa-type opioid recepto ( 380) 335 69.5 1.3e-11 NP_001305426 (OMIM: 165196) kappa-type opioid rece ( 409) 335 69.6 1.4e-11 NP_003848 (OMIM: 603691) galanin receptor type 2 [ ( 387) 330 68.7 2.4e-11 NP_872588 (OMIM: 602548) nociceptin receptor isofo ( 370) 326 68.0 3.8e-11 NP_001186948 (OMIM: 602548) nociceptin receptor is ( 370) 326 68.0 3.8e-11 XP_016883343 (OMIM: 602548) PREDICTED: nociceptin ( 370) 326 68.0 3.8e-11 NP_000904 (OMIM: 602548) nociceptin receptor isofo ( 370) 326 68.0 3.8e-11 XP_016883342 (OMIM: 602548) PREDICTED: nociceptin ( 388) 326 68.0 3.9e-11 XP_016883341 (OMIM: 602548) PREDICTED: nociceptin ( 388) 326 68.0 3.9e-11 XP_011527130 (OMIM: 602548) PREDICTED: nociceptin ( 388) 326 68.0 3.9e-11 NP_001305782 (OMIM: 602548) nociceptin receptor is ( 399) 326 68.0 4e-11 NP_001041 (OMIM: 182452) somatostatin receptor typ ( 369) 325 67.8 4.3e-11 NP_000900 (OMIM: 162641) neuropeptide Y receptor t ( 384) 323 67.5 5.6e-11 XP_011530312 (OMIM: 162641) PREDICTED: neuropeptid ( 384) 323 67.5 5.6e-11 XP_005263088 (OMIM: 162641) PREDICTED: neuropeptid ( 384) 323 67.5 5.6e-11 XP_016865902 (OMIM: 609042) PREDICTED: opsin-5 iso ( 285) 320 66.8 6.8e-11 XP_016865901 (OMIM: 609042) PREDICTED: opsin-5 iso ( 285) 320 66.8 6.8e-11 NP_001040 (OMIM: 182451) somatostatin receptor typ ( 391) 316 66.3 1.3e-10 NP_001471 (OMIM: 600377) galanin receptor type 1 [ ( 349) 315 66.0 1.4e-10 NP_001043 (OMIM: 182454) somatostatin receptor typ ( 388) 312 65.6 2.1e-10 NP_000902 (OMIM: 165195) delta-type opioid recepto ( 372) 311 65.4 2.3e-10 NP_004239 (OMIM: 600895) prolactin-releasing pepti ( 370) 307 64.7 3.7e-10 XP_016865898 (OMIM: 609042) PREDICTED: opsin-5 iso ( 303) 302 63.7 6.1e-10 NP_001044 (OMIM: 182455) somatostatin receptor typ ( 364) 302 63.8 6.7e-10 NP_001166031 (OMIM: 182455) somatostatin receptor ( 364) 302 63.8 6.7e-10 NP_001305784 (OMIM: 602548) nociceptin receptor is ( 341) 297 62.9 1.2e-09 XP_016883344 (OMIM: 602548) PREDICTED: nociceptin ( 365) 297 62.9 1.2e-09 NP_001305783 (OMIM: 602548) nociceptin receptor is ( 365) 297 62.9 1.2e-09 XP_011527132 (OMIM: 602548) PREDICTED: nociceptin ( 289) 295 62.4 1.4e-09 NP_001138757 (OMIM: 600018) mu-type opioid recepto ( 389) 295 62.6 1.6e-09 NP_001008504 (OMIM: 600018) mu-type opioid recepto ( 392) 295 62.6 1.6e-09 NP_001138755 (OMIM: 600018) mu-type opioid recepto ( 397) 295 62.7 1.6e-09 >>NP_001699 (OMIM: 190900,613522) short-wave-sensitive o (348 aa) initn: 2387 init1: 2387 opt: 2387 Z-score: 2244.1 bits: 423.7 E(85289): 3e-118 Smith-Waterman score: 2387; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348) 10 20 30 40 50 60 pF1KE9 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 QKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 250 260 270 280 290 300 310 320 330 340 pF1KE9 IIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 310 320 330 340 >>NP_000530 (OMIM: 136880,180380,610445,613731) rhodopsi (348 aa) initn: 1064 init1: 1038 opt: 1085 Z-score: 1029.4 bits: 198.9 E(85289): 1.3e-50 Smith-Waterman score: 1085; 45.9% identity (77.5% similar) in 338 aa overlap (9-341:9-346) 10 20 30 40 50 pF1KE9 MRKMSEEEFYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLV ::. :.: ..: .:.. :::..: : : . ::.: ....:::.: ..: NP_000 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 ATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVA .:...:::: ::::::.:.. . ... . . .. .: .:::::: : ::::..:.. NP_000 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIP : .. :::. ::.:::.:.:::..::::. .::. : ::..... . ::. ::::.:: NP_000 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE9 EGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQES :::::::: :.::. . .::.. ..:. : .:. .: : : ::. ..: .::::::: NP_000 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE9 ATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACI :::::::.::.:::..:: .: .:.::::. :.:. .... .. ..:::.::.::: : NP_000 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 250 260 270 280 290 300 300 310 320 330 340 pF1KE9 YNPIIYCFMNKQFQACIMKMVC-GKA-MTDESDTCSSQKTEVSTVSSTQVGPN :::.:: .:::::. :.. .: :: . :. . . .:::.: :. NP_000 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 310 320 330 340 >>NP_000504 (OMIM: 300821,303700,303800) medium-wave-sen (364 aa) initn: 1052 init1: 963 opt: 1033 Z-score: 980.7 bits: 190.0 E(85289): 6.9e-48 Smith-Waterman score: 1033; 44.3% identity (74.8% similar) in 345 aa overlap (5-347:23-363) 10 20 30 40 pF1KE9 MRKMSEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFM .. .. . : .:. ::..::.::::: :...: ...: NP_000 MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWM 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE9 GTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFV : . . :..::.::...::::.:::.::::.. . . ... : . :::: NP_000 IFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIASTISVVNQVYGYFV 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE9 FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIG .:. .:.:::. .. :.. ::::....::..:.:::::: ::..: :.. . .: . NP_000 LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAKLAIVGIAFSWIWA 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE9 IGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS-ESYTWFLFIFCFIVPLSLICFSY . ::.:::::. :.::. ::::: .. :..: . .:: :.. : :.:::.: . : NP_000 AVWTAPPIFGWSRYWPHGLKTSCGPDVFS-GSSYPGVQSYMIVLMVTCCITPLSIIVLCY 190 200 210 220 230 230 240 250 260 270 280 pF1KE9 TQLLRALKAVAAQQQESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGL :. :..::: ::.:: .:::::.::.::::::: .:: :. ::: :: . . : .. . NP_000 LQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAANPGYPF 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE9 DLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTV ....:.::.::: ::::.:: :::.::. ::... :: . : :. :..:::::.: NP_000 HPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF-GKKVDDGSELSSASKTEVSSV 300 310 320 330 340 350 pF1KE9 SSTQVGPN :: :.: NP_000 SS--VSPA 360 >>NP_064445 (OMIM: 300822,303700,303900) long-wave-sensi (364 aa) initn: 1047 init1: 957 opt: 1027 Z-score: 975.1 bits: 189.0 E(85289): 1.4e-47 Smith-Waterman score: 1027; 43.2% identity (75.7% similar) in 345 aa overlap (5-347:23-363) 10 20 30 40 pF1KE9 MRKMSEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFM .. .. . : .:. ::..::.::::: :...: ...: NP_064 MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWM 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE9 GTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFV : . :..::.::...::::.:::.::::.. . . ... .: . .:::: NP_064 IFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIASTISIVNQVSGYFV 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE9 FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIG .:. .:.:::. .. :.. ::::....::..:.:::::: ::..: :.. . .: . NP_064 LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAKLAIVGIAFSWIWA 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE9 IGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS-ESYTWFLFIFCFIVPLSLICFSY . ::.:::::. :.::. ::::: .. :..: . .:: :.. : :.::..: . : NP_064 AVWTAPPIFGWSRYWPHGLKTSCGPDVFS-GSSYPGVQSYMIVLMVTCCIIPLAIIMLCY 190 200 210 220 230 230 240 250 260 270 280 pF1KE9 TQLLRALKAVAAQQQESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGL :. :..::: ::.:: .:::::.::.::::::. ..:::. ::. :: . . : .... NP_064 LQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAANPGYAF 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE9 DLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTV ....:..:.::: ::::.:: :::.::. ::... :: . : :. :..:::::.: NP_064 HPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF-GKKVDDGSELSSASKTEVSSV 300 310 320 330 340 350 pF1KE9 SSTQVGPN :: :.: NP_064 SS--VSPA 360 >>NP_055137 (OMIM: 606695) opsin-3 [Homo sapiens] (402 aa) initn: 470 init1: 180 opt: 533 Z-score: 513.8 bits: 103.7 E(85289): 7e-22 Smith-Waterman score: 533; 30.5% identity (62.4% similar) in 311 aa overlap (19-319:23-325) 10 20 30 40 50 pF1KE9 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWA---FYLQAAFMGTVFLIGFPLNA :: . ::... . : ..:.. :.: : NP_055 MYSGNRSGGHGYWDGGGAAGAEGPAPAGTLSPAPLFSPGTYERLALLLGSIGLLGVGNNL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 MVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASC--NGYFVFGRHVCALEG .::: ....:: : . .:::.:.. .:. .:.: .:: :: ::. :. :. .: NP_055 LVLVLYYKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFV-SCLRNGW-VWDTVGCVWDG 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 FLGTVAGLVTGWSLAFLAFERYI-VICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFF : :.. :.:. .:. ::.:::: :. :: .. . :.: . : ... . :.. NP_055 FSGSLFGIVSIATLTVLAYERYIRVVHARVINFSWAWR-AITYI---WLYSLAWAGAPLL 120 130 140 150 160 170 180 190 200 210 220 pF1KE9 GWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLL---RAL ::.:.: . .: :: . .. . :.. :::. :..:::..: : ..: : : NP_055 GWNRYILDVHGLGCTVDWKSKDAN--DSSFVLFLFLGCLVVPLGVIAHCYGHILYSIRML 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE9 KAVAAQQQ-ESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVT . : : . : :.....: .:. .: ::..:: .. . .::...: . . NP_055 RCVEDLQTIQVIKILKYEKKLAKMCFLMIFTFLVCWMPYIVICFLVVNGHGHLVTPTISI 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE9 IPSFFSKSACIYNPIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVG . .:.:: .:::.:: :: ..:. .....: NP_055 VSYLFAKSNTVYNPVIYVFMIRKFRRSLLQLLCLRLLRCQRPAKDLPAAGSEMQIRPIVM 300 310 320 330 340 350 pF1KE9 PN NP_055 SQKDGDRPKKKVTFNSSSIIFIITSDESLSVDDSDKTNGSKVDVIQVRPL 360 370 380 390 400 >>NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] (354 aa) initn: 380 init1: 229 opt: 402 Z-score: 392.1 bits: 81.0 E(85289): 4.2e-15 Smith-Waterman score: 402; 24.2% identity (59.4% similar) in 298 aa overlap (22-313:20-316) 10 20 30 40 50 pF1KE9 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPL-NAMVLVAT :: . : : :.:. :.. : . :..:: . NP_859 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMS 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 LRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGY-FVFGRHVCALEGFLGTVAG : :: .: . . .:.. . . . . : . :: . .::: : :. : : NP_859 SRRKKKLRPAEIMTINLAVCDLGISVVGK-PFTIISCFCHRWVFGWIGCRWYGWAGFFFG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 LVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPE . ... ....::. :: . .. ::: . : :. . . :. : . ..:: NP_859 CGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPE 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE9 GLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKA----VAAQQ . :: ::. . .. .. . ...::...: ..: :::.... .:. :: . NP_859 PFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFD 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE9 QESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKS .. ... : ......... ..: . ..:::. ... . .: .. ..: ..:....:: NP_859 SRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKS 240 250 260 270 280 290 300 310 320 330 340 pF1KE9 ACIYNPIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN : .:::::: .. .: : NP_859 AAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE 300 310 320 330 340 350 >>XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 isoform (408 aa) initn: 380 init1: 229 opt: 402 Z-score: 391.5 bits: 81.1 E(85289): 4.5e-15 Smith-Waterman score: 402; 24.2% identity (59.4% similar) in 298 aa overlap (22-313:20-316) 10 20 30 40 50 pF1KE9 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPL-NAMVLVAT :: . : : :.:. :.. : . :..:: . XP_016 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMS 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 LRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGY-FVFGRHVCALEGFLGTVAG : :: .: . . .:.. . . . . : . :: . .::: : :. : : XP_016 SRRKKKLRPAEIMTINLAVCDLGISVVGK-PFTIISCFCHRWVFGWIGCRWYGWAGFFFG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 LVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPE . ... ....::. :: . .. ::: . : :. . . :. : . ..:: XP_016 CGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPE 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE9 GLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKA----VAAQQ . :: ::. . .. .. . ...::...: ..: :::.... .:. :: . XP_016 PFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFD 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE9 QESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKS .. ... : ......... ..: . ..:::. ... . .: .. ..: ..:....:: XP_016 SRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKS 240 250 260 270 280 290 300 310 320 330 340 pF1KE9 ACIYNPIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN : .:::::: .. .: : XP_016 AAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEDKGRL 300 310 320 330 340 350 >>NP_150598 (OMIM: 606665) melanopsin isoform 1 [Homo sa (478 aa) initn: 339 init1: 187 opt: 395 Z-score: 384.3 bits: 80.0 E(85289): 1.1e-14 Smith-Waterman score: 489; 28.5% identity (62.3% similar) in 305 aa overlap (30-319:66-367) 10 20 30 40 50 pF1KE9 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVAT : : : .. . : : :. : :. . NP_150 ISSLGRLPSISPTAPGTWAAAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTF 40 50 60 70 80 90 60 70 80 90 100 110 pF1KE9 LRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVF-VASCNGYFVFGRHVCALEGFLGTVAG : ..:: : :....:.. . ::. :. ::: ..: ..::. : . .: :.. : NP_150 CRSRSLRTPANMFIINLAVSDFLMS-FTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFG 100 110 120 130 140 150 120 130 140 150 160 170 pF1KE9 LVTGWSLAFLAFERYIVICKPFGNFRFSSKH-ALTVVLATWTIGIGVSIPPFFGWSRFIP . . .:. .:..::.:: .:...: .::. : :.:..: ... :.::::::: ..: NP_150 ISSMITLTAIALDRYLVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVP 160 170 180 190 200 210 180 190 200 210 220 230 pF1KE9 EGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQES ::: ::. :... : .:: .: : :..:: .: . : ..::.. .. : NP_150 EGLLTSCSWDYMSFTPAVR--AYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTF 220 230 240 250 260 270 240 250 260 270 280 pF1KE9 ATTQ------------KAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLV .. . ..: .......... : . ..::.: :. . : : . NP_150 GACKGNGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMS 280 290 300 310 320 330 290 300 310 320 330 340 pF1KE9 TIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV-CGKAMTDESDTCSSQKTEVSTVSSTQ ..:. ..:.. :.::::: . . .... : . . : NP_150 SVPAVIAKASAIHNPIIYAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRST 340 350 360 370 380 390 pF1KE9 VGPN NP_150 LTSHTSNLSWISIRRRQESLGSESEVGWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKA 400 410 420 430 440 450 >>XP_016872445 (OMIM: 606665) PREDICTED: melanopsin isof (528 aa) initn: 339 init1: 187 opt: 395 Z-score: 383.9 bits: 80.1 E(85289): 1.2e-14 Smith-Waterman score: 489; 28.5% identity (62.3% similar) in 305 aa overlap (30-319:66-367) 10 20 30 40 50 pF1KE9 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVAT : : : .. . : : :. : :. . XP_016 ISSLGRLPSISPTAPGTWAAAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTF 40 50 60 70 80 90 60 70 80 90 100 110 pF1KE9 LRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVF-VASCNGYFVFGRHVCALEGFLGTVAG : ..:: : :....:.. . ::. :. ::: ..: ..::. : . .: :.. : XP_016 CRSRSLRTPANMFIINLAVSDFLMS-FTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFG 100 110 120 130 140 150 120 130 140 150 160 170 pF1KE9 LVTGWSLAFLAFERYIVICKPFGNFRFSSKH-ALTVVLATWTIGIGVSIPPFFGWSRFIP . . .:. .:..::.:: .:...: .::. : :.:..: ... :.::::::: ..: XP_016 ISSMITLTAIALDRYLVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVP 160 170 180 190 200 210 180 190 200 210 220 230 pF1KE9 EGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQES ::: ::. :... : .:: .: : :..:: .: . : ..::.. .. : XP_016 EGLLTSCSWDYMSFTPAVR--AYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTF 220 230 240 250 260 270 240 250 260 270 280 pF1KE9 ATTQ------------KAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLV .. . ..: .......... : . ..::.: :. . : : . XP_016 GACKGNGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMS 280 290 300 310 320 330 290 300 310 320 330 340 pF1KE9 TIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV-CGKAMTDESDTCSSQKTEVSTVSSTQ ..:. ..:.. :.::::: . . .... : . . : XP_016 SVPAVIAKASAIHNPIIYAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRST 340 350 360 370 380 390 pF1KE9 VGPN XP_016 LTSHTSNLSWISIRRRQESLGSESEVGWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKA 400 410 420 430 440 450 >>NP_006574 (OMIM: 605224) visual pigment-like receptor (337 aa) initn: 383 init1: 332 opt: 390 Z-score: 381.1 bits: 78.9 E(85289): 1.7e-14 Smith-Waterman score: 390; 25.7% identity (59.9% similar) in 284 aa overlap (38-317:29-308) 10 20 30 40 50 60 pF1KE9 EFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQ :... . .:.. : .:: ..::.:: NP_006 MLRNNLGNSSDSKNEDGSVFSQTEHNIVATYLIMAGMISIISNIIVLGIFIKYKELRT 10 20 30 40 50 70 80 90 100 110 120 pF1KE9 PLNYILVNVSFGGFLLCIFSV-FPVFVAS-CNGYFVFGRHVCALEGFLGTVAGLVTGWSL : : :..:.. . . :. .:. .:: : . :: : . . :. :... : NP_006 PTNAIIINLAVTD--IGVSSIGYPMSAASDLYGSWKFGYAGCQVYAGLNIFFGMASIGLL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE9 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG . .: .::..:: : . :.... . ..:..: :. .. :..::. . :. .: NP_006 TVVAVDRYLTICLPDVGRRMTTNTYIGLILGAWINGLFWALMPIIGWASYAPDPTGATCT 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE9 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKA-VAAQQQESATTQKAE .: .. ::: .. . :::::... . : .. ..: .... :: . . .. NP_006 INWRKNDRSFV--SYTMTVIAINFIVPLTVMFYCYYHVTLSIKHHTTSDCTESLNRDWSD 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE9 R-EVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY . .:..: :.:. : : . ::. .. . . . .. : .:.::. .::: :: NP_006 QIDVTKMSVIMICMFLVAWSPYSIVCLWASFGDPKKIPPPMAIIAPLFAKSSTFYNPCIY 240 250 260 270 280 290 310 320 330 340 pF1KE9 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN ::.:. .. : NP_006 VVANKKFRRAMLAMFKCQTHQTMPVTSILPMDVSQNPLASGRI 300 310 320 330 348 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:16:52 2016 done: Sun Nov 6 16:16:53 2016 Total Scan time: 6.760 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]