FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3886, 116 aa 1>>>pF1KE3886 116 - 116 aa - 116 aa Library: human.CCDS.faa 18921897 residues in 33420 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2756+/-0.000635; mu= 10.9919+/- 0.038 mean_var=68.3326+/-13.371, 0's: 0 Z-trim(111.2): 9 B-trim: 0 in 0/49 Lambda= 0.155153 statistics sampled from 12388 (12392) to 12388 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.371), width: 16 Scan time: 0.820 The best scores are: opt bits E(33420) CCDS5788.1 NDUFA5 gene_id:4698|Hs109|chr7 ( 116) 772 180.7 1.8e-46 CCDS64760.1 NDUFA5 gene_id:4698|Hs109|chr7 ( 116) 732 171.8 8.9e-44 CCDS75655.1 NDUFA5 gene_id:4698|Hs109|chr7 ( 101) 629 148.7 6.9e-37 CCDS75656.1 NDUFA5 gene_id:4698|Hs109|chr7 ( 77) 393 95.8 4.4e-21 >>CCDS5788.1 NDUFA5 gene_id:4698|Hs109|chr7 (116 aa) initn: 772 init1: 772 opt: 772 Z-score: 948.0 bits: 180.7 E(33420): 1.8e-46 Smith-Waterman score: 772; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KE3 MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI 70 80 90 100 110 >>CCDS64760.1 NDUFA5 gene_id:4698|Hs109|chr7 (116 aa) initn: 732 init1: 732 opt: 732 Z-score: 899.6 bits: 171.8 E(33420): 8.9e-44 Smith-Waterman score: 732; 99.1% identity (100.0% similar) in 110 aa overlap (7-116:7-116) 10 20 30 40 50 60 pF1KE3 MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK .::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 MPYRVGQTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI 70 80 90 100 110 >>CCDS75655.1 NDUFA5 gene_id:4698|Hs109|chr7 (101 aa) initn: 629 init1: 629 opt: 629 Z-score: 775.9 bits: 148.7 E(33420): 6.9e-37 Smith-Waterman score: 630; 87.1% identity (87.1% similar) in 116 aa overlap (1-116:1-101) 10 20 30 40 50 60 pF1KE3 MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK ::::::: :::::::::::::::::::::::::::::::::::::: CCDS75 MAGVLKK---------------RLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK 10 20 30 40 70 80 90 100 110 pF1KE3 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI 50 60 70 80 90 100 >>CCDS75656.1 NDUFA5 gene_id:4698|Hs109|chr7 (77 aa) initn: 523 init1: 393 opt: 393 Z-score: 492.1 bits: 95.8 E(33420): 4.4e-21 Smith-Waterman score: 449; 66.4% identity (66.4% similar) in 116 aa overlap (1-116:1-77) 10 20 30 40 50 60 pF1KE3 MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK :::::::::::::::::::::: CCDS75 MAGVLKKTTGLVGLAVCNTPHE-------------------------------------- 10 20 70 80 90 100 110 pF1KE3 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 -EPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI 30 40 50 60 70 116 residues in 1 query sequences 18921897 residues in 33420 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Wed Aug 4 20:40:22 2021 done: Wed Aug 4 20:40:22 2021 Total Scan time: 0.820 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]