FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1774, 281 aa 1>>>pF1KE1774 281 - 281 aa - 281 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0577+/-0.000333; mu= 16.5153+/- 0.021 mean_var=67.5235+/-13.765, 0's: 0 Z-trim(114.9): 36 B-trim: 0 in 0/50 Lambda= 0.156080 statistics sampled from 25046 (25082) to 25046 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.294), width: 16 Scan time: 6.240 The best scores are: opt bits E(85289) NP_059998 (OMIM: 615733) probable 18S rRNA (guanin ( 281) 1913 439.5 3.4e-123 XP_006715910 (OMIM: 615733) PREDICTED: probable 18 ( 304) 1713 394.5 1.3e-109 NP_001189489 (OMIM: 615733) probable 18S rRNA (gua ( 298) 1607 370.6 2e-102 XP_011514081 (OMIM: 615733) PREDICTED: probable 18 ( 248) 1456 336.5 2.9e-92 XP_011514080 (OMIM: 615733) PREDICTED: probable 18 ( 271) 1256 291.5 1.1e-78 NP_689772 (OMIM: 612546) Williams-Beuren syndrome ( 245) 149 42.2 0.0011 XP_006723683 (OMIM: 252010,612360) PREDICTED: NADH ( 247) 149 42.2 0.0011 XP_016867266 (OMIM: 612546) PREDICTED: Williams-Be ( 271) 149 42.3 0.0012 XP_016867267 (OMIM: 612546) PREDICTED: Williams-Be ( 271) 149 42.3 0.0012 XP_011527644 (OMIM: 252010,612360) PREDICTED: NADH ( 299) 149 42.3 0.0013 NP_077025 (OMIM: 252010,612360) NADH dehydrogenase ( 345) 149 42.3 0.0015 >>NP_059998 (OMIM: 615733) probable 18S rRNA (guanine-N( (281 aa) initn: 1913 init1: 1913 opt: 1913 Z-score: 2332.8 bits: 439.5 E(85289): 3.4e-123 Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281) 10 20 30 40 50 60 pF1KE1 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_059 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_059 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_059 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNERFPLRMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_059 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNERFPLRMS 190 200 210 220 230 240 250 260 270 280 pF1KE1 RRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF ::::::::::::::::::::::::::::::::::::::::: NP_059 RRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF 250 260 270 280 >>XP_006715910 (OMIM: 615733) PREDICTED: probable 18S rR (304 aa) initn: 1711 init1: 1711 opt: 1713 Z-score: 2088.9 bits: 394.5 E(85289): 1.3e-109 Smith-Waterman score: 1713; 98.1% identity (98.5% similar) in 261 aa overlap (23-281:44-304) 10 20 30 40 50 pF1KE1 MASRGRRPEHGGPPELFYDETEARKYVR--NSRMIDIQTRMAGRALELLYLP ::: : .::::::::::::::::::::: XP_006 PGNTFASEGSLNTAGRPGVGKRQVAPVAGVARKGRRIWGSRMIDIQTRMAGRALELLYLP 20 30 40 50 60 70 60 70 80 90 100 110 pF1KE1 ENKPCYLLDIGCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 ENKPCYLLDIGCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIP 80 90 100 110 120 130 120 130 140 150 160 170 pF1KE1 FKPGTFDGCISISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FKPGTFDGCISISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQ 140 150 160 170 180 190 180 190 200 210 220 230 pF1KE1 LELITTQATKAGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LELITTQATKAGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVF 200 210 220 230 240 250 240 250 260 270 280 pF1KE1 TNERFPLRMSRRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF ::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 TNERFPLRMSRRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF 260 270 280 290 300 >>NP_001189489 (OMIM: 615733) probable 18S rRNA (guanine (298 aa) initn: 1597 init1: 1597 opt: 1607 Z-score: 1960.0 bits: 370.6 E(85289): 2e-102 Smith-Waterman score: 1869; 94.3% identity (94.3% similar) in 298 aa overlap (1-281:1-298) 10 20 30 40 50 60 pF1KE1 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNER------ :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNEREGGAFE 190 200 210 220 230 240 240 250 260 270 280 pF1KE1 -----------FPLRMSRRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RRGIRGHQTRRFPLRMSRRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF 250 260 270 280 290 >>XP_011514081 (OMIM: 615733) PREDICTED: probable 18S rR (248 aa) initn: 1456 init1: 1456 opt: 1456 Z-score: 1777.4 bits: 336.5 E(85289): 2.9e-92 Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214) 10 20 30 40 50 60 pF1KE1 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNERFPLRMS :::::::::::::::::::::::::::::::::: XP_011 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEVPIKDVEAGNGEEESGMGAGEEGAAQ 190 200 210 220 230 240 250 260 270 280 pF1KE1 RRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF XP_011 APGQGSQT >>XP_011514080 (OMIM: 615733) PREDICTED: probable 18S rR (271 aa) initn: 1254 init1: 1254 opt: 1256 Z-score: 1533.5 bits: 291.5 E(85289): 1.1e-78 Smith-Waterman score: 1256; 97.4% identity (97.9% similar) in 194 aa overlap (23-214:44-237) 10 20 30 40 50 pF1KE1 MASRGRRPEHGGPPELFYDETEARKYVR--NSRMIDIQTRMAGRALELLYLP ::: : .::::::::::::::::::::: XP_011 PGNTFASEGSLNTAGRPGVGKRQVAPVAGVARKGRRIWGSRMIDIQTRMAGRALELLYLP 20 30 40 50 60 70 60 70 80 90 100 110 pF1KE1 ENKPCYLLDIGCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ENKPCYLLDIGCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIP 80 90 100 110 120 130 120 130 140 150 160 170 pF1KE1 FKPGTFDGCISISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FKPGTFDGCISISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQ 140 150 160 170 180 190 180 190 200 210 220 230 pF1KE1 LELITTQATKAGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVF :::::::::::::::::::::::::::::::::::::::::::: XP_011 LELITTQATKAGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEVPIKDVEAGNGEEESG 200 210 220 230 240 250 240 250 260 270 280 pF1KE1 TNERFPLRMSRRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF XP_011 MGAGEEGAAQAPGQGSQT 260 270 >>NP_689772 (OMIM: 612546) Williams-Beuren syndrome chro (245 aa) initn: 128 init1: 64 opt: 149 Z-score: 186.9 bits: 42.2 E(85289): 0.0011 Smith-Waterman score: 149; 30.4% identity (51.4% similar) in 138 aa overlap (4-131:13-150) 10 20 30 40 pF1KE1 MASRGR-RPEHGGPP---ELFYDETEARKYVRN-SRMIDIQTRMAGRALEL :.: : :: : .: . . : : .. . .. :.: : NP_689 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 LYLPENKPCYLLDIGCGTGLSGSYLSDEGHYWV-GLDISPAMLDEAVDREIEGDLLLGDM . .::..::::: .. : : . :.: ::.::..: . : : . NP_689 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE1 GQ-GIPFKPGTFDGCISISAV---QWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVL :: .: ::::. . ..:. : ::: NP_689 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNSSNLQYKEAL 130 140 150 160 170 180 >>XP_006723683 (OMIM: 252010,612360) PREDICTED: NADH deh (247 aa) initn: 66 init1: 66 opt: 149 Z-score: 186.9 bits: 42.2 E(85289): 0.0011 Smith-Waterman score: 149; 30.5% identity (61.0% similar) in 105 aa overlap (34-136:74-172) 10 20 30 40 50 60 pF1KE1 RGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDIGCG .. .:.: :. . .:.: : ::.::: XP_006 LNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYD---IPRNFP-LALDLGCG 50 60 70 80 90 70 80 90 100 110 120 pF1KE1 TGLSGSYLSDE--GHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCIS : ..::. : :... . ::. : .. . :: .:.: . .::: .::: .: XP_006 RGYIAQYLNKETIGKFFQA-DIAENALKNSSETEIPTVSVLADE-EFLPFKENTFDLVVS 100 110 120 130 140 150 130 140 150 160 170 180 pF1KE1 ISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATKA ...:. . . : XP_006 SLSLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHIS 160 170 180 190 200 210 >>XP_016867266 (OMIM: 612546) PREDICTED: Williams-Beuren (271 aa) initn: 128 init1: 64 opt: 149 Z-score: 186.3 bits: 42.3 E(85289): 0.0012 Smith-Waterman score: 149; 30.4% identity (51.4% similar) in 138 aa overlap (4-131:13-150) 10 20 30 40 pF1KE1 MASRGR-RPEHGGPP---ELFYDETEARKYVRN-SRMIDIQTRMAGRALEL :.: : :: : .: . . : : .. . .. :.: : XP_016 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 LYLPENKPCYLLDIGCGTGLSGSYLSDEGHYWV-GLDISPAMLDEAVDREIEGDLLLGDM . .::..::::: .. : : . :.: ::.::..: . : : . XP_016 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE1 GQ-GIPFKPGTFDGCISISAV---QWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVL :: .: ::::. . ..:. : ::: XP_016 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGTTIPSRDGPGLWLLPLPHLT 130 140 150 160 170 180 >>XP_016867267 (OMIM: 612546) PREDICTED: Williams-Beuren (271 aa) initn: 128 init1: 64 opt: 149 Z-score: 186.3 bits: 42.3 E(85289): 0.0012 Smith-Waterman score: 149; 30.4% identity (51.4% similar) in 138 aa overlap (4-131:13-150) 10 20 30 40 pF1KE1 MASRGR-RPEHGGPP---ELFYDETEARKYVRN-SRMIDIQTRMAGRALEL :.: : :: : .: . . : : .. . .. :.: : XP_016 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 LYLPENKPCYLLDIGCGTGLSGSYLSDEGHYWV-GLDISPAMLDEAVDREIEGDLLLGDM . .::..::::: .. : : . :.: ::.::..: . : : . XP_016 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE1 GQ-GIPFKPGTFDGCISISAV---QWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVL :: .: ::::. . ..:. : ::: XP_016 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGTTIPSRDGPGLWLLPLPHLT 130 140 150 160 170 180 >>XP_011527644 (OMIM: 252010,612360) PREDICTED: NADH deh (299 aa) initn: 66 init1: 66 opt: 149 Z-score: 185.7 bits: 42.3 E(85289): 0.0013 Smith-Waterman score: 149; 30.5% identity (61.0% similar) in 105 aa overlap (34-136:74-172) 10 20 30 40 50 60 pF1KE1 RGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDIGCG .. .:.: :. . .:.: : ::.::: XP_011 LNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYD---IPRNFP-LALDLGCG 50 60 70 80 90 70 80 90 100 110 120 pF1KE1 TGLSGSYLSDE--GHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCIS : ..::. : :... . ::. : .. . :: .:.: . .::: .::: .: XP_011 RGYIAQYLNKETIGKFFQA-DIAENALKNSSETEIPTVSVLADE-EFLPFKENTFDLVVS 100 110 120 130 140 150 130 140 150 160 170 180 pF1KE1 ISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATKA ...:. . . : XP_011 SLSLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHIS 160 170 180 190 200 210 281 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:24:04 2016 done: Sun Nov 6 16:24:05 2016 Total Scan time: 6.240 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]