(Circular) (Six-base) MAPSORT of: pFN21AE1701.seq Check: 2960 from: 1 to: 5323 pFN21AE1701 5323 bp With 182 enzymes: SgfI * August 16, 2010 14:49 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2563 2563 Size: 5323 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3133 278 Size: 53 83 186 936 1597 2468 Fragments arranged by size: 2468 1597 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2666 1937 Size: 729 4594 Acc65I G'GTAC_C Cuts at: 2644 2644 Size: 5323 AclI AA'CG_TT Cuts at: 1563 3450 3823 1563 Size: 1887 373 3063 Fragments arranged by size: 3063 1887 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2309 3386 4770 5038 1632 Size: 677 1077 1384 268 1917 Fragments arranged by size: 1917 1384 1077 677 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5126 AflIII A'CryG_T Cuts at: 1203 2107 4222 5199 1203 Size: 904 2115 977 1327 Fragments arranged by size: 2115 1327 977 904 AgeI A'CCGG_T Cuts at: 4154 4154 Size: 5323 AhdI GACnn_n'nnGTC Cuts at: 4052 4052 Size: 5323 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5323 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5323 AlwNI CAG_nnn'CTG Cuts at: 3066 4638 3066 Size: 1572 3751 ApaLI G'TGCA_C Cuts at: 2269 3380 4536 2269 Size: 1111 1156 3056 Fragments arranged by size: 3056 1156 1111 ApoI r'AATT_y Cuts at: 1493 2632 2858 3010 5119 1493 Size: 1139 226 152 2109 1697 Fragments arranged by size: 2109 1697 1139 226 152 AseI AT'TA_AT Cuts at: 160 1032 3877 160 Size: 872 2845 1606 Fragments arranged by size: 2845 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5323 AvaI C'yCGr_G Cuts at: 1870 1943 2211 2648 1870 Size: 73 268 437 4545 Fragments arranged by size: 4545 437 268 73 BamHI G'GATC_C Cuts at: 2653 3020 2653 Size: 367 4956 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2644 4099 618 Size: 325 217 627 857 1455 1842 Fragments arranged by size: 1842 1455 857 627 325 217 BanII G_rGCy'C Cuts at: 1391 2387 2642 1391 Size: 996 255 4072 Fragments arranged by size: 4072 996 255 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4352 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3514 3548 1903 Size: 34 50 34 1493 34 3678 Fragments arranged by size: 3678 1493 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3215 4425 3215 Size: 1210 4113 BclI T'GATC_A Cuts at: 1548 1548 Size: 5323 BfrBI ATG'CAT Cuts at: 2049 2049 Size: 5323 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2451 3934 136 Size: 107 122 71 631 605 779 1483 1525 Fragments arranged by size: 1525 1483 779 631 605 122 107 71 BglII A'GATC_T Cuts at: 5318 5318 Size: 5323 BlpI GC'TnA_GC Cuts at: 2740 2740 Size: 5323 Bme1580I G_kGCm'C Cuts at: 1790 2273 3384 4540 1790 Size: 483 1111 1156 2573 Fragments arranged by size: 2573 1156 1111 483 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5323 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3054 4012 442 Size: 416 53 83 399 24 1637 958 1753 Fragments arranged by size: 1753 1637 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5323 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2392 3983 1239 Size: 1153 1591 2579 Fragments arranged by size: 2579 1591 1153 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3448 4313 4611 3448 Size: 865 298 4160 Fragments arranged by size: 4160 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3986 882 Size: 617 2487 2219 Fragments arranged by size: 2487 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3114 493 Size: 711 1910 2702 Fragments arranged by size: 2702 1910 711 BsaBI GATnn'nnATC Cuts at: 5317 5317 Size: 5323 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3130 3512 4147 275 Size: 53 83 186 936 1597 382 635 1451 Fragments arranged by size: 1597 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3756 4154 4428 4575 4986 3756 Size: 398 274 147 411 4093 Fragments arranged by size: 4093 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2285 2315 2384 2414 1178 Size: 30 165 30 882 30 69 30 4087 Fragments arranged by size: 4087 882 165 69 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2364 2395 1186 Size: 1178 31 4114 Fragments arranged by size: 4114 1178 31 BseYI C'CCAG_C Cuts at: 2135 4526 5022 2135 Size: 2391 496 2436 Fragments arranged by size: 2436 2391 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4750 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2773 3534 4562 1540 Size: 275 186 772 761 1028 2301 Fragments arranged by size: 2301 1028 772 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2273 2334 2387 3384 3469 4540 2273 Size: 61 53 997 85 1071 3056 Fragments arranged by size: 3056 1071 997 85 61 53 BsmI GAATG_Cn' Cuts at: 2834 2927 2834 Size: 93 5230 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2273 2334 2387 2642 3384 3469 4540 Size: 399 483 61 53 255 742 85 1071 Cuts at: 4540 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 483 399 255 85 61 53 BspEI T'CCGG_A Cuts at: 4986 4986 Size: 5323 BspHI T'CATG_A Cuts at: 3212 4942 3212 Size: 1730 3593 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2563 2678 844 Size: 1719 115 3489 Fragments arranged by size: 3489 1719 115 BsrBI CCG'CTC Cuts at: 1394 1823 2584 3210 1394 Size: 429 761 626 3507 Fragments arranged by size: 3507 761 626 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3818 3992 65 Size: 1183 2570 174 1396 Fragments arranged by size: 2570 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3967 4154 1700 Size: 110 2157 187 2869 Fragments arranged by size: 2869 2157 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5323 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5323 BssSI C'ACGA_G Cuts at: 3383 4395 3383 Size: 1012 4311 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5323 BstBI TT'CG_AA Cuts at: 4127 4127 Size: 5323 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5323 BstYI r'GATC_y Cuts at: 1972 2653 3020 3405 3422 4874 4960 4972 5318 Size: 681 367 385 17 1452 86 12 346 Cuts at: 5318 1972 Size: 1977 Fragments arranged by size: 1977 1452 681 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4771 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4584 Fragments arranged by size: 4584 683 56 BtsI GCAGTG_nn' Cuts at: 2447 2484 2839 3633 3653 2447 Size: 37 355 794 20 4117 Fragments arranged by size: 4117 794 355 37 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5323 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5288 DraI TTT'AAA Cuts at: 2077 2627 2077 Size: 550 4773 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4330 809 Size: 507 3014 1802 Fragments arranged by size: 3014 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2263 2770 3659 Size: 54 1425 50 275 18 433 507 889 Cuts at: 3659 5288 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 507 433 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2770 1537 Size: 275 958 4090 Fragments arranged by size: 4090 958 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3253 1353 Size: 1900 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3910 4284 4430 387 Size: 1064 138 2321 374 146 1280 Fragments arranged by size: 2321 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2385 2385 Size: 5323 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2309 2392 3386 3983 4770 5038 1239 Size: 393 677 83 994 597 787 268 1524 Fragments arranged by size: 1524 994 787 677 597 393 268 83 EcoRI G'AATT_C Cuts at: 2632 3010 2632 Size: 378 4945 FspI TGC'GCA Cuts at: 3829 3829 Size: 5323 HaeII r_GCGC'y Cuts at: 1678 4470 1678 Size: 2792 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2534 2566 3964 3996 4038 Size: 32 135 32 962 32 1398 32 42 Cuts at: 4038 4070 1373 Size: 32 2626 Fragments arranged by size: 2626 1398 962 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2667 2913 669 Size: 988 281 729 246 3079 Fragments arranged by size: 3079 988 729 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5323 HpaI GTT'AAC Cuts at: 2913 2913 Size: 5323 KpnI G_GTAC'C Cuts at: 2648 2648 Size: 5323 MfeI C'AATT_G Cuts at: 2922 2922 Size: 5323 MluI A'CGCG_T Cuts at: 5199 5199 Size: 5323 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4437 4621 1305 Size: 3132 184 2007 Fragments arranged by size: 3132 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2265 10 Size: 54 1425 343 433 3068 Fragments arranged by size: 3068 1425 433 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2054 3281 3640 3799 518 Size: 648 888 1227 359 159 2042 Fragments arranged by size: 2042 1227 888 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2437 2739 3416 4564 4809 1606 Size: 831 302 677 1148 245 2120 Fragments arranged by size: 2120 1148 831 677 302 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4771 NdeI CA'TA_TG Cuts at: 387 387 Size: 5323 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5323 NotI GC'GGCC_GC Cuts at: 2770 2770 Size: 5323 NsiI A_TGCA'T Cuts at: 2051 2051 Size: 5323 NspI r_CATG'y Cuts at: 1132 1229 2049 2111 2551 2681 4226 1132 Size: 97 820 62 440 130 1545 2229 Fragments arranged by size: 2229 1545 820 440 130 97 62 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5323 PciI A'CATG_T Cuts at: 2107 4222 2107 Size: 2115 3208 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5323 PmeI GTTT'AAAC Cuts at: 2627 2627 Size: 5323 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3392 3424 4905 4937 3392 Size: 32 1481 32 3778 Fragments arranged by size: 3778 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5323 PsiI TTA'TAA Cuts at: 2893 2893 Size: 5323 PstI C_TGCA'G Cuts at: 830 2442 2675 830 Size: 1612 233 3478 Fragments arranged by size: 3478 1612 233 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5323 PvuII CAG'CTG Cuts at: 2437 2437 Size: 5323 SacI G_AGCT'C Cuts at: 2387 2387 Size: 5323 SalI G'TCGA_C Cuts at: 1936 2665 1936 Size: 729 4594 SbfI CC_TGCA'GG Cuts at: 2675 2675 Size: 5323 ScaI AGT'ACT Cuts at: 2369 3571 5283 2369 Size: 1202 1712 2409 Fragments arranged by size: 2409 1712 1202 SfcI C'TryA_G Cuts at: 826 1045 2438 2671 3806 4487 4678 826 Size: 219 1393 233 1135 681 191 1471 Fragments arranged by size: 1471 1393 1135 681 233 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5323 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5323 SmaI CCC'GGG Cuts at: 1872 2650 1872 Size: 778 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3427 4328 4590 820 Size: 197 926 1484 901 262 1553 Fragments arranged by size: 1553 1484 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3114 493 Size: 2621 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5323 SphI G_CATG'C Cuts at: 1132 2049 2681 1132 Size: 917 632 3774 Fragments arranged by size: 3774 917 632 SspI AAT'ATT Cuts at: 5 52 3247 5 Size: 47 3195 2081 Fragments arranged by size: 3195 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5323 StyI C'CwwG_G Cuts at: 513 1065 2762 513 Size: 552 1697 3074 Fragments arranged by size: 3074 1697 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3350 3367 3520 3705 4150 325 Size: 1255 1770 17 153 185 445 1498 Fragments arranged by size: 1770 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2367 3569 5281 Size: 274 80 33 51 1443 390 1202 1712 Cuts at: 5281 96 Size: 138 Fragments arranged by size: 1712 1443 1202 390 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2285 2317 2384 2416 2510 2542 5283 5315 2285 Size: 32 67 32 94 32 2741 32 2293 Fragments arranged by size: 2741 2293 94 67 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5323 XbaI T'CTAG_A Cuts at: 2659 2659 Size: 5323 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5323 XmaI C'CCGG_G Cuts at: 1870 2648 1870 Size: 778 4545 XmnI GAAnn'nnTTC Cuts at: 3452 3452 Size: 5323 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3131 276 Size: 53 83 186 936 1597 2468 Fragments arranged by size: 2468 1597 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NsiI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI