FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5283, 256 aa 1>>>pF1KE5283 256 - 256 aa - 256 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1400+/-0.000281; mu= 16.1825+/- 0.018 mean_var=74.7184+/-15.018, 0's: 0 Z-trim(118.7): 4 B-trim: 0 in 0/54 Lambda= 0.148375 statistics sampled from 32000 (32004) to 32000 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.375), width: 16 Scan time: 5.930 The best scores are: opt bits E(85289) NP_003721 (OMIM: 612944,612951) ribonuclease T2 pr ( 256) 1847 404.1 1.3e-112 XP_016866886 (OMIM: 612944,612951) PREDICTED: ribo ( 218) 1579 346.6 2.2e-95 XP_016866887 (OMIM: 612944,612951) PREDICTED: ribo ( 164) 1153 255.3 4.9e-68 XP_016866888 (OMIM: 612944,612951) PREDICTED: ribo ( 162) 1104 244.8 7e-65 >>NP_003721 (OMIM: 612944,612951) ribonuclease T2 precur (256 aa) initn: 1847 init1: 1847 opt: 1847 Z-score: 2142.7 bits: 404.1 E(85289): 1.3e-112 Smith-Waterman score: 1847; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256) 10 20 30 40 50 60 pF1KE5 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 CAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 CAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 KIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 KIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRV 190 200 210 220 230 240 250 pF1KE5 CEDGPVFYPPPKKTKH :::::::::::::::: NP_003 CEDGPVFYPPPKKTKH 250 >>XP_016866886 (OMIM: 612944,612951) PREDICTED: ribonucl (218 aa) initn: 1579 init1: 1579 opt: 1579 Z-score: 1833.6 bits: 346.6 E(85289): 2.2e-95 Smith-Waterman score: 1579; 100.0% identity (100.0% similar) in 218 aa overlap (39-256:1-218) 10 20 30 40 50 60 pF1KE5 ALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPDYWTIHGLW :::::::::::::::::::::::::::::: XP_016 MVQHWPETVCEKIQNDCRDPPDYWTIHGLW 10 20 30 70 80 90 100 110 120 pF1KE5 PDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDAL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 NSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPS 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 QDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCEDGPVFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCEDGPVFY 160 170 180 190 200 210 250 pF1KE5 PPPKKTKH :::::::: XP_016 PPPKKTKH >>XP_016866887 (OMIM: 612944,612951) PREDICTED: ribonucl (164 aa) initn: 1153 init1: 1153 opt: 1153 Z-score: 1342.5 bits: 255.3 E(85289): 4.9e-68 Smith-Waterman score: 1153; 100.0% identity (100.0% similar) in 164 aa overlap (93-256:1-164) 70 80 90 100 110 120 pF1KE5 TIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCA :::::::::::::::::::::::::::::: XP_016 MRAYWPDVIHSFPNRSRFWKHEWEKHGTCA 10 20 30 130 140 150 160 170 180 pF1KE5 AQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKI 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE5 QCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCE 100 110 120 130 140 150 250 pF1KE5 DGPVFYPPPKKTKH :::::::::::::: XP_016 DGPVFYPPPKKTKH 160 >>XP_016866888 (OMIM: 612944,612951) PREDICTED: ribonucl (162 aa) initn: 1100 init1: 1100 opt: 1104 Z-score: 1285.9 bits: 244.8 E(85289): 7e-65 Smith-Waterman score: 1104; 96.8% identity (98.7% similar) in 155 aa overlap (1-154:1-155) 10 20 30 40 50 60 pF1KE5 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 CAAQVDALNSQKKYFGRSLELYRELDLNSV-LLKLGIKPSINYYQVADFKDALARVYGVI :::::::::::::::::::::::::::: . .::. XP_016 CAAQVDALNSQKKYFGRSLELYRELDLNRLQILKMPLPEYME 130 140 150 160 180 190 200 210 220 230 pF1KE5 PKIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLR 256 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:24:19 2016 done: Mon Nov 7 23:24:20 2016 Total Scan time: 5.930 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]