FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5283, 256 aa 1>>>pF1KE5283 256 - 256 aa - 256 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1573+/-0.000634; mu= 15.9821+/- 0.038 mean_var=70.5347+/-13.792, 0's: 0 Z-trim(112.1): 11 B-trim: 0 in 0/50 Lambda= 0.152712 statistics sampled from 12879 (12881) to 12879 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.396), width: 16 Scan time: 2.450 The best scores are: opt bits E(32554) CCDS5295.1 RNASET2 gene_id:8635|Hs108|chr6 ( 256) 1847 415.3 2.1e-116 >>CCDS5295.1 RNASET2 gene_id:8635|Hs108|chr6 (256 aa) initn: 1847 init1: 1847 opt: 1847 Z-score: 2203.4 bits: 415.3 E(32554): 2.1e-116 Smith-Waterman score: 1847; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256) 10 20 30 40 50 60 pF1KE5 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 CAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 CAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 KIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 KIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRV 190 200 210 220 230 240 250 pF1KE5 CEDGPVFYPPPKKTKH :::::::::::::::: CCDS52 CEDGPVFYPPPKKTKH 250 256 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:24:18 2016 done: Mon Nov 7 23:24:19 2016 Total Scan time: 2.450 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]