FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5533, 467 aa 1>>>pF1KE5533 467 - 467 aa - 467 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3625+/-0.000729; mu= 17.7508+/- 0.044 mean_var=68.8637+/-13.711, 0's: 0 Z-trim(109.5): 9 B-trim: 0 in 0/52 Lambda= 0.154554 statistics sampled from 10940 (10943) to 10940 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.336), width: 16 Scan time: 2.400 The best scores are: opt bits E(32554) CCDS5200.1 FUCA2 gene_id:2519|Hs108|chr6 ( 467) 3322 749.6 1.6e-216 CCDS244.2 FUCA1 gene_id:2517|Hs108|chr1 ( 466) 1866 424.9 8.8e-119 >>CCDS5200.1 FUCA2 gene_id:2519|Hs108|chr6 (467 aa) initn: 3322 init1: 3322 opt: 3322 Z-score: 4000.6 bits: 749.6 E(32554): 1.6e-216 Smith-Waterman score: 3322; 99.6% identity (100.0% similar) in 467 aa overlap (1-467:1-467) 10 20 30 40 50 60 pF1KE5 MRPQELPRLAFPLLLLLLLLLPPPPCPAHSATRFDPTWESLDARQLPAWFDQAKFGIFIH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 MRPQELPRLAFPLLLLLLLLLPPPPCPAHSATRFDPTWESLDARQLPAWFDQAKFGIFIH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 WGVFSVPSFGSEWFWWYWQKEKIPKYVEFMKDNYPPSFKYEDFGPLFTAKFFNANQWADI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 WGVFSVPSFGSEWFWWYWQKEKIPKYVEFMKDNYPPSFKYEDFGPLFTAKFFNANQWADI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 FQASGAKYIVLTSKHHEGFTLWGSEYSWNWNAIDEGPKRDIVKELEVAIRNRTDLRFGLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 FQASGAKYIVLTSKHHEGFTLWGSEYSWNWNAIDEGPKRDIVKELEVAIRNRTDLRFGLY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 YSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNYQPEVLWSDGDGGAPDQYWNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 YSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNYQPEVLWSDGDGGAPDQYWNS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 TGFLAWLYNESPVRGTVVTNDRWGAGSICKHGGFYTCSDRYNPGHLLPHKWENCMTIDKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 TGFLAWLYNESPVRGTVVTNDRWGAGSICKHGGFYTCSDRYNPGHLLPHKWENCMTIDKL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 SWGYRREAGISDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGTISVVFEERLRQVGSWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: CCDS52 SWGYRREAGISDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGTISVVFEERLRQMGSWL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 KVNGEAIYETYTWRSQNDTVTPDVWYTSKPKEKLVYAIFLKWPTSGQLFLGHPKAILGAT ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 KVNGEAIYETHTWRSQNDTVTPDVWYTSKPKEKLVYAIFLKWPTSGQLFLGHPKAILGAT 370 380 390 400 410 420 430 440 450 460 pF1KE5 EVKLLGHGQPLNWISLEQNGIMVELPQLTIHQMPCKWGWALALTNVI ::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 EVKLLGHGQPLNWISLEQNGIMVELPQLTIHQMPCKWGWALALTNVI 430 440 450 460 >>CCDS244.2 FUCA1 gene_id:2517|Hs108|chr1 (466 aa) initn: 1076 init1: 931 opt: 1866 Z-score: 2246.0 bits: 424.9 E(32554): 8.8e-119 Smith-Waterman score: 1866; 54.8% identity (76.8% similar) in 469 aa overlap (1-466:1-465) 10 20 30 40 50 pF1KE5 MR-PQELPRLAFPLLLLLLLLLPPPPCP--AHSATRFDPTWESLDARQLPAWFDQAKFGI :: : : : : ::::::.: :. :. : : :::.: ::::::.::::. CCDS24 MRAPGMRSRPAGPALLLLLLFLGAAESVRRAQPPRRYTPDWPSLDSRPLPAWFDEAKFGV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 FIHWGVFSVPSFGSEWFWWYWQKEKIPKYVEFMKDNYPPSFKYEDFGPLFTAKFFNANQW ::::::::::..:::::::.:: : :.: .::.:::::.:.: :::: :::.::. ..: CCDS24 FIHWGVFSVPAWGSEWFWWHWQGEGRPQYQRFMRDNYPPGFSYADFGPQFTARFFHPEEW 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 ADIFQASGAKYIVLTSKHHEGFTLWGSEYSWNWNAIDEGPKRDIVKELEVAIRNRTDLRF ::.:::.::::.:::.::::::: : : :::::. : ::.::.: :: .:.:.: ..:. CCDS24 ADLFQAAGAKYVVLTTKHHEGFTNWPSPVSWNWNSKDVGPHRDLVGELGTALRKR-NIRY 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 GLYYSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNYQPEVLWSDGDGGAPDQY :::.::.::::::.: :....:. ..: .::.::::.:::.:.:...::::. :: : CCDS24 GLYHSLLEWFHPLYLLDKKNGFKTQHFVSAKTMPELYDLVNSYKPDLIWSDGEWECPDTY 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 WNSTGFLAWLYNESPVRGTVVTNDRWGAGSICKHGGFYTCSDRYNPGHLLPHKWENCMTI ::::.::.::::.:::. ::.::::: . :.:::.:.: :...: : :::: : .: CCDS24 WNSTNFLSWLYNDSPVKDEVVVNDRWGQNCSCHHGGYYNCEDKFKPQSLPDHKWEMCTSI 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE5 DKLSWGYRREAGISDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGTISVVFEERLRQVG ::.::::::. ..:: :....::.::: ::: :.::::: :: : .:.::: :: CCDS24 DKFSWGYRRDMALSDVTEESEIISELVQTVSLGGNYLLNIGPTKDGLIVPIFQERLLAVG 300 310 320 330 340 350 360 370 380 390 400 410 pF1KE5 SWLKVNGEAIYETYTWRSQNDTVTPDVWYTSKPKEKLVYAIFLKWPTSGQLFLGHPKAIL .::..:::::: . :: : . : .:::::: . ::::::.:: .: : : : CCDS24 KWLSINGEAIYASKPWRVQWEKNTTSVWYTSKGSA--VYAIFLHWPENGVLNLESP-ITT 360 370 380 390 400 410 420 430 440 450 460 pF1KE5 GATEVKLLGHGQPLNWISLEQNGIMVELPQLTIHQMPCKWGWALALTNVI ..:.. .:: :.: . ..:... :::: .: ...:.. ::.: CCDS24 STTKITMLGIQGDLKWSTDPDKGLFISLPQLPPSAVPAEFAWTIKLTGVK 420 430 440 450 460 467 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:33:40 2016 done: Tue Nov 8 01:33:41 2016 Total Scan time: 2.400 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]