Result of FASTA (omim) for pFN21AE0765
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0765, 339 aa
  1>>>pF1KE0765 339 - 339 aa - 339 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8583+/-0.000537; mu= 18.5150+/- 0.033
 mean_var=101.8482+/-26.006, 0's: 0 Z-trim(107.7): 544  B-trim: 1789 in 2/47
 Lambda= 0.127086
 statistics sampled from 14963 (15736) to 14963 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.519), E-opt: 0.2 (0.185), width:  16
 Scan time:  6.330

The best scores are:                                      opt bits E(85289)
NP_612200 (OMIM: 609333) trace amine-associated re ( 339) 2315 435.9 5.7e-122
NP_778227 (OMIM: 608282) trace amine-associated re ( 348)  983 191.7 1.9e-48
NP_778237 (OMIM: 608923) trace amine-associated re ( 345)  941 184.0   4e-46
NP_444508 (OMIM: 606927) trace amine-associated re ( 342)  920 180.2 5.7e-45
NP_001028252 (OMIM: 604849) trace amine-associated ( 351)  755 149.9 7.4e-36
NP_055441 (OMIM: 604849) trace amine-associated re ( 306)  712 142.0 1.6e-33
NP_003958 (OMIM: 607405) trace amine-associated re ( 337)  561 114.4 3.7e-25
NP_071640 (OMIM: 142703) histamine H2 receptor iso ( 359)  450 94.0 5.1e-19
XP_006714928 (OMIM: 142703) PREDICTED: histamine H ( 362)  450 94.0 5.1e-19
NP_001124527 (OMIM: 142703) histamine H2 receptor  ( 397)  450 94.1 5.4e-19
XP_011532851 (OMIM: 142703) PREDICTED: histamine H ( 422)  450 94.1 5.7e-19
XP_016864915 (OMIM: 142703) PREDICTED: histamine H ( 422)  450 94.1 5.7e-19
XP_006714927 (OMIM: 142703) PREDICTED: histamine H ( 422)  450 94.1 5.7e-19
XP_005265961 (OMIM: 142703) PREDICTED: histamine H ( 422)  450 94.1 5.7e-19
XP_011532850 (OMIM: 142703) PREDICTED: histamine H ( 422)  450 94.1 5.7e-19
NP_000785 (OMIM: 126449) D(1A) dopamine receptor [ ( 446)  403 85.5 2.3e-16
NP_000015 (OMIM: 109690,600807,601665) beta-2 adre ( 413)  392 83.5 8.9e-16
NP_000855 (OMIM: 182133) 5-hydroxytryptamine recep ( 377)  379 81.0 4.4e-15
NP_000675 (OMIM: 109630,607276) beta-1 adrenergic  ( 477)  379 81.2 5.1e-15
NP_000016 (OMIM: 109691,601665) beta-3 adrenergic  ( 408)  377 80.7 5.9e-15
NP_000672 (OMIM: 104210) alpha-2A adrenergic recep ( 465)  372 79.9 1.2e-14
NP_940799 (OMIM: 601898) growth hormone secretagog ( 366)  361 77.7 4.2e-14
NP_000674 (OMIM: 104250) alpha-2C adrenergic recep ( 462)  357 77.1 8.1e-14
NP_444264 (OMIM: 607449) neuropeptide FF receptor  ( 420)  356 76.9 8.7e-14
NP_001138228 (OMIM: 607449) neuropeptide FF recept ( 423)  356 76.9 8.7e-14
NP_004876 (OMIM: 607449) neuropeptide FF receptor  ( 522)  356 77.0 9.9e-14
NP_000673 (OMIM: 104260,607876) alpha-2B adrenergi ( 450)  355 76.7   1e-13
NP_000667 (OMIM: 600446) adenosine receptor A2b [H ( 332)  352 76.0 1.2e-13
NP_001265427 (OMIM: 102776) adenosine receptor A2a ( 412)  353 76.3 1.3e-13
NP_001265428 (OMIM: 102776) adenosine receptor A2a ( 412)  353 76.3 1.3e-13
NP_001265426 (OMIM: 102776) adenosine receptor A2a ( 412)  353 76.3 1.3e-13
NP_000666 (OMIM: 102776) adenosine receptor A2a [H ( 412)  353 76.3 1.3e-13
NP_001265429 (OMIM: 102776) adenosine receptor A2a ( 412)  353 76.3 1.3e-13
NP_000854 (OMIM: 182131) 5-hydroxytryptamine recep ( 390)  348 75.4 2.3e-13
NP_001718 (OMIM: 300107) bombesin receptor subtype ( 399)  346 75.0   3e-13
NP_005305 (OMIM: 305670) gastrin-releasing peptide ( 384)  345 74.8 3.3e-13
NP_001035262 (OMIM: 602164) 5-hydroxytryptamine re ( 360)  344 74.6 3.6e-13
XP_011534091 (OMIM: 182132) PREDICTED: 5-hydroxytr ( 365)  344 74.6 3.7e-13
NP_000856 (OMIM: 182132) 5-hydroxytryptamine recep ( 365)  344 74.6 3.7e-13
NP_955525 (OMIM: 602164) 5-hydroxytryptamine recep ( 378)  344 74.6 3.7e-13
NP_001035259 (OMIM: 602164) 5-hydroxytryptamine re ( 387)  344 74.6 3.8e-13
NP_000861 (OMIM: 602164) 5-hydroxytryptamine recep ( 388)  344 74.6 3.8e-13
NP_001273339 (OMIM: 602164) 5-hydroxytryptamine re ( 411)  344 74.7 3.9e-13
NP_001035263 (OMIM: 602164) 5-hydroxytryptamine re ( 428)  344 74.7   4e-13
NP_002502 (OMIM: 162341) neuromedin-B receptor iso ( 390)  330 72.1 2.3e-12
NP_937822 (OMIM: 606925) pyroglutamylated RFamide  ( 431)  329 72.0 2.7e-12
NP_000859 (OMIM: 312861) 5-hydroxytryptamine recep ( 458)  328 71.8 3.2e-12
NP_001243689 (OMIM: 312861) 5-hydroxytryptamine re ( 458)  328 71.8 3.2e-12
NP_057624 (OMIM: 605569) probable G-protein couple ( 423)  327 71.6 3.5e-12
NP_000862 (OMIM: 601109) 5-hydroxytryptamine recep ( 440)  320 70.3 8.7e-12


>>NP_612200 (OMIM: 609333) trace amine-associated recept  (339 aa)
 initn: 2315 init1: 2315 opt: 2315  Z-score: 2310.7  bits: 435.9 E(85289): 5.7e-122
Smith-Waterman score: 2315; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KE0 MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVGNLIVIVSISHFKQLHTPTNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVGNLIVIVSISHFKQLHTPTNW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHTSTDIMLSSASIFHLSFISID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 LIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHTSTDIMLSSASIFHLSFISID
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIFLELNFKGAEEIYYKHVHCRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 RYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIFLELNFKGAEEIYYKHVHCRG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQARLISDANQKLQIGLEMKNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 GCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQARLISDANQKLQIGLEMKNG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 ISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFLHYIIPPTLNDVLIWFGYLNSTFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 ISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFLHYIIPPTLNDVLIWFGYLNSTFN
              250       260       270       280       290       300

              310       320       330         
pF1KE0 PMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELSS
       :::::::::::::::::::::::::::::::::::::::
NP_612 PMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELSS
              310       320       330         

>>NP_778227 (OMIM: 608282) trace amine-associated recept  (348 aa)
 initn: 981 init1: 512 opt: 983  Z-score: 990.7  bits: 191.7 E(85289): 1.9e-48
Smith-Waterman score: 983; 42.8% identity (73.1% similar) in 334 aa overlap (4-336:13-343)

                        10        20        30        40        50 
pF1KE0          MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVGNLIVIVSISHF
                   .:.. .: ::.:. .:   :. ::... .  . .  :::.:...: ::
NP_778 MVNNFSQAEAVELCYKNVNESCIKTPYSPGPRSILYAVLGFGAVLAAFGNLLVMIAILHF
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KE0 KQLHTPTNWLIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHTSTDIMLSSASI
       ::::::::.:: :.: .:::.:  :::.: :::.: :::::. .::.::  :  .  ::.
NP_778 KQLHTPTNFLIASLACADFLVGVTVMPFSTVRSVESCWYFGDSYCKFHTCFDTSFCFASL
               70        80        90       100       110       120

             120       130       140       150       160       170 
pF1KE0 FHLSFISIDRYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIFLELNFKGAEEI
       :::  ::.::: :: ::: : .:... :  . : .::   ....:....   : .: ::.
NP_778 FHLCCISVDRYIAVTDPLTYPTKFTVSVSGICIVLSWFFSVTYSFSIFYTGANEEGIEEL
              130       140       150       160       170       180

             180       190       200       210       220        230
pF1KE0 YYKHVHCRGGCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQARLI-SDANQK
           . : :::.. ...   .: :.  :.::.  :. .: .:.:.::.::: : : :.: 
NP_778 VVA-LTCVGGCQAPLNQNWVLLCFLL-FFIPNVAMVFIYSKIFLVAKHQARKIESTASQA
               190       200        210       220       230        

              240       250       260       270       280       290
pF1KE0 LQIGLEMKNGISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFLHYIIPPTLNDVLI
        . .  .:. ... .::::.:::::.:..::. : :... .:.: ....: :: . ..:.
NP_778 QSSSESYKERVAK-RERKAAKTLGIAMAAFLVSWLPYLVDAVIDAYMNFITPPYVYEILV
      240       250        260       270       280       290       

              300       310       320       330           
pF1KE0 WFGYLNSTFNPMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELSS  
       :  : ::..::..::::: :: ::.:... ::... :::  .:: :     
NP_778 WCVYYNSAMNPLIYAFFYQWFGKAIKLIVSGKVLRTDSSTTNLFSEEVETD
       300       310       320       330       340        

>>NP_778237 (OMIM: 608923) trace amine-associated recept  (345 aa)
 initn: 932 init1: 506 opt: 941  Z-score: 949.1  bits: 184.0 E(85289): 4e-46
Smith-Waterman score: 941; 41.1% identity (71.2% similar) in 333 aa overlap (4-336:13-343)

                        10        20        30        40        50 
pF1KE0          MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVGNLIVIVSISHF
                   .:.  .: ::::  .:   :. :: .. .  . .. :::.:..:: ::
NP_778 MSSNSSLLVAVQLCYANVNGSCVKIPFSPGSRVILYIVFGFGAVLAVFGNLLVMISILHF
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KE0 KQLHTPTNWLIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHTSTDIMLSSASI
       ::::.:::.:. :.: .:::.:  :::.::::..: :::::. :: .::  :. .  .:.
NP_778 KQLHSPTNFLVASLACADFLVGVTVMPFSMVRTVESCWYFGRSFCTFHTCCDVAFCYSSL
               70        80        90       100       110       120

             120       130       140       150       160       170 
pF1KE0 FHLSFISIDRYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIFLELNFKGAEEI
       ::: ::::::: :: ::: : .:... :  . : .:: .: ... : .:    .  . : 
NP_778 FHLCFISIDRYIAVTDPLVYPTKFTVSVSGICISVSWILPLMYS-GAVFYTGVYDDGLEE
              130       140       150       160        170         

             180       190       200       210       220       230 
pF1KE0 YYKHVHCRGGCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQARLISDANQKL
           ..: :::..  .. . ::: . ::.::  ::. .:  :.:.:..::. : ....: 
NP_778 LSDALNCIGGCQTVVNQ-NWVLTDFLSFFIPTFIMIILYGNIFLVARRQAKKIENTGSKT
     180       190        200       210       220       230        

             240       250       260       270       280       290 
pF1KE0 QIGLEMKNGISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFLHYIIPPTLNDVLIW
       . . :  ..    .::::.::::... .:.: : :. : ...: :. .: :  . ..  :
NP_778 ESSSESYKARVARRERKAAKTLGVTVVAFMISWLPYSIDSLIDAFMGFITPACIYEICCW
      240       250       260       270       280       290        

             300       310       320       330         
pF1KE0 FGYLNSTFNPMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELSS
        .: ::..::..::.::::::::.:... :......:.  .:: :   
NP_778 CAYYNSAMNPLIYALFYPWFRKAIKVIVTGQVLKNSSATMNLFSEHI 
      300       310       320       330       340      

>>NP_444508 (OMIM: 606927) trace amine-associated recept  (342 aa)
 initn: 887 init1: 481 opt: 920  Z-score: 928.4  bits: 180.2 E(85289): 5.7e-45
Smith-Waterman score: 920; 39.3% identity (71.4% similar) in 336 aa overlap (1-336:9-342)

                       10        20        30        40        50  
pF1KE0         MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVGNLIVIVSISHFK
               .. .:.. .: ::... .:   :. ::. . .  : .. :::.:..:. :::
NP_444 MTSNFSQPVVQLCYEDVNGSCIETPYSPGSRVILYTAFSFGSLLAVFGNLLVMTSVLHFK
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KE0 QLHTPTNWLIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHTSTDIMLSSASIF
       :::.:::.:: :.: .:::.:  :: .::::..: :::::  :: .:.  :. .  .:..
NP_444 QLHSPTNFLIASLACADFLVGVTVMLFSMVRTVESCWYFGAKFCTLHSCCDVAFCYSSVL
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KE0 HLSFISIDRYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIFLELNFKGAEEIY
       :: :: :::: .: ::: : .:... :  . : .:: .: ... ....  .:  : ::. 
NP_444 HLCFICIDRYIVVTDPLVYATKFTVSVSGICISVSWILPLTYSGAVFYTGVNDDGLEELV
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KE0 YKHVHCRGGCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQARLISDANQKLQ
        . ..: :::... :.   .. :.  :.::  .:. .: .:.::::.::  :  ...:..
NP_444 -SALNCVGGCQIIVSQGWVLIDFLL-FFIPTLVMIILYSKIFLIAKQQAIKIETTSSKVE
               190       200        210       220       230        

            240       250       260       270       280       290  
pF1KE0 IGLEMKNGISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFLHYIIPPTLNDVLIWF
        . :  .    ..::::.::::... .:.: : :. .  ..: :. .. :  . ..  : 
NP_444 SSSESYKIRVAKRERKAAKTLGVTVLAFVISWLPYTVDILIDAFMGFLTPAYIYEICCWS
      240       250       260       270       280       290        

            300       310       320       330         
pF1KE0 GYLNSTFNPMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELSS
       .: ::..::..::.::::::::.:..: : ... .::  .::::   
NP_444 AYYNSAMNPLIYALFYPWFRKAIKLILSGDVLKASSSTISLFLE   
      300       310       320       330       340     

>>NP_001028252 (OMIM: 604849) trace amine-associated rec  (351 aa)
 initn: 1065 init1: 610 opt: 755  Z-score: 764.7  bits: 149.9 E(85289): 7.4e-36
Smith-Waterman score: 1111; 50.6% identity (76.7% similar) in 322 aa overlap (5-324:25-335)

                                   10        20        30        40
pF1KE0                     MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVG
                               : .  : :: .:. :  ::...::.:.  :. :. :
NP_001 MAVSSEQHELSHFKRTQTKKEKFNCSEYGNRSCPENERSLGVRVAMYSFMAGSIFITIFG
               10        20        30        40        50        60

               50        60        70        80        90       100
pF1KE0 NLIVIVSISHFKQLHTPTNWLIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHT
       :: .:.:::.:::::::::.:: ::: .:::::  .:::::.::.:.::::: .::::. 
NP_001 NLAMIISISYFKQLHTPTNFLILSMAITDFLLGFTIMPYSMIRSVENCWYFGLTFCKIYY
               70        80        90       100       110       120

              110       120       130       140       150       160
pF1KE0 STDIMLSSASIFHLSFISIDRYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIF
       : :.::: .:::::  ..:::.::.: :: :..:..: ::  .... ::::..::::..:
NP_001 SFDLMLSITSIFHLCSVAIDRFYAICYPLLYSTKITIPVIKRLLLLCWSVPGAFAFGVVF
              130       140       150       160       170       180

              170       180       190       200       210       220
pF1KE0 LELNFKGAEEIYYKHVHCRGGCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQ
        :    : :  :   : : ..: :.:.:. :.  ::..:. :::.:. .: .:. .....
NP_001 SEAYADGIEG-YDILVACSSSCPVMFNKLWGTTLFMAGFFTPGSMMVGIYGKIFAVSRKH
              190        200       210       220       230         

                230       240       250       260       270        
pF1KE0 ARLISD--ANQKLQIGLEMKNGISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFLH
       :. :..   ::. :.          .:..::.::::::.::::.:: : :.  ..::::.
NP_001 AHAINNLRENQNNQV----------KKDKKAAKTLGIVIGVFLLCWFPCFFTILLDPFLN
     240       250                 260       270       280         

      280       290       300       310       320       330        
pF1KE0 YIIPPTLNDVLIWFGYLNSTFNPMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELS
       .  : .: :.: ::::.::: ::..:.:::::::.:::..:.::::              
NP_001 FSTPVVLFDALTWFGYFNSTCNPLIYGFFYPWFRRALKYILLGKIFSSCFHNTILCMQKE
     290       300       310       320       330       340         

         
pF1KE0 S 
         
NP_001 SE
     350 

>>NP_055441 (OMIM: 604849) trace amine-associated recept  (306 aa)
 initn: 1029 init1: 574 opt: 712  Z-score: 722.8  bits: 142.0 E(85289): 1.6e-33
Smith-Waterman score: 1068; 51.5% identity (77.7% similar) in 301 aa overlap (26-324:1-290)

               10        20        30        40        50        60
pF1KE0 MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVGNLIVIVSISHFKQLHTPTNW
                                .::.:.  :. :. ::: .:.:::.:::::::::.
NP_055                          MYSFMAGSIFITIFGNLAMIISISYFKQLHTPTNF
                                        10        20        30     

               70        80        90       100       110       120
pF1KE0 LIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHTSTDIMLSSASIFHLSFISID
       :: ::: .:::::  .:::::.::.:.::::: .::::. : :.::: .:::::  ..::
NP_055 LILSMAITDFLLGFTIMPYSMIRSVENCWYFGLTFCKIYYSFDLMLSITSIFHLCSVAID
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KE0 RYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIFLELNFKGAEEIYYKHVHCRG
       :.::.: :: :..:..: ::  .... ::::..::::..: :    : :  :   : : .
NP_055 RFYAICYPLLYSTKITIPVIKRLLLLCWSVPGAFAFGVVFSEAYADGIEG-YDILVACSS
         100       110       120       130       140        150    

              190       200       210       220         230        
pF1KE0 GCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQARLISD--ANQKLQIGLEMK
       .: :.:.:. :.  ::..:. :::.:. .: .:. .....:. :..   ::. :.     
NP_055 SCPVMFNKLWGTTLFMAGFFTPGSMMVGIYGKIFAVSRKHAHAINNLRENQNNQV-----
          160       170       180       190       200              

      240       250       260       270       280       290        
pF1KE0 NGISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFLHYIIPPTLNDVLIWFGYLNST
            .:..::.::::::.::::.:: : :.  ..::::..  : .: :.: ::::.:::
NP_055 -----KKDKKAAKTLGIVIGVFLLCWFPCFFTILLDPFLNFSTPVVLFDALTWFGYFNST
          210       220       230       240       250       260    

      300       310       320       330          
pF1KE0 FNPMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELSS 
        ::..:.:::::::.:::..:.::::                
NP_055 CNPLIYGFFYPWFRRALKYILLGKIFSSCFHNTILCMQKESE
          270       280       290       300      

>>NP_003958 (OMIM: 607405) trace amine-associated recept  (337 aa)
 initn: 762 init1: 440 opt: 561  Z-score: 572.7  bits: 114.4 E(85289): 3.7e-25
Smith-Waterman score: 893; 39.8% identity (71.0% similar) in 334 aa overlap (4-336:16-337)

                           10        20        30        40        
pF1KE0             MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVGNLIVIVSI
                      ::... : :: ..  .  ..  .:   .  .:  ..::..:  ..
NP_003 MRAVFIQGAEEHPAAFCYQV-NGSCPRTVHTLGIQLVIYLACAAGMLIIVLGNVFVAFAV
               10        20         30        40        50         

       50        60        70        80        90       100        
pF1KE0 SHFKQLHTPTNWLIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHTSTDIMLSS
       :.:: ::::::.:. :.: .:..:: ::.: : .::.: ::.::. .:..::  : ..  
NP_003 SYFKALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCL
      60        70        80        90       100       110         

      110       120       130       140       150       160        
pF1KE0 ASIFHLSFISIDRYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIFLELNFKGA
       .::::: ::::::. :.:::: : .:... :   .:. .:.:::  :.  .::  .   .
NP_003 TSIFHLCFISIDRHCAICDPLLYPSKFTVRVALRYILAGWGVPA--AYTSLFLYTDVVET
     120       130       140       150       160         170       

       170       180       190       200       210       220       
pF1KE0 E-EIYYKHVHCRGGCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQARLISDA
       .   . ... : :.:.....:. : :.:   :..:  ::. .: .:...: .::. :.  
NP_003 RLSQWLEEMPCVGSCQLLLNKFWGWLNF-PLFFVPCLIMISLYVKIFVVATRQAQQITTL
       180       190       200        210       220       230      

       230       240       250       260       270       280       
pF1KE0 NQKLQIGLEMKNGISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFLHYIIPPTLND
       ...:        : .. .::::.:::::..:..:.:: :: : :..: .::.: :: . :
NP_003 SKSLA-------GAAK-HERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFD
        240               250       260       270       280        

       290       300       310       320       330         
pF1KE0 VLIWFGYLNSTFNPMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELSS
       ..:::.:.::. ::..:.: : :::::::. :  :.:. ..    :. :   
NP_003 IFIWFAYFNSACNPIIYVFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE   
      290       300       310       320       330          

>>NP_071640 (OMIM: 142703) histamine H2 receptor isoform  (359 aa)
 initn: 570 init1: 345 opt: 450  Z-score: 462.4  bits: 94.0 E(85289): 5.1e-19
Smith-Waterman score: 608; 32.3% identity (65.5% similar) in 316 aa overlap (19-333:14-317)

               10        20        30        40        50        60
pF1KE0 MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVGNLIVIVSISHFKQLHTPTNW
                         :.  . ..  .....:: :..::..: ....  ..:.. :: 
NP_071      MAPNGTASSFCLDSTACKITITVVLAVLILITVAGNVVVCLAVGLNRRLRNLTNC
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KE0 LIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHTSTDIMLSSASIFHLSFISID
       .: :.: .:.::: ::.:.: . .    : ::.:::.:.:: :.:: .:::..: .::.:
NP_071 FIVSLAITDLLLGLLVLPFSAIYQLSCKWSFGKVFCNIYTSLDVMLCTASILNLFMISLD
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KE0 RYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIFLELNFKGAEEIYYKHVHCRG
       :: :: ::::: . .. . . . . . : .  ...:  : :  : ..      :  :  .
NP_071 RYCAVMDPLRYPVLVTPVRVAISLVLIWVISITLSFLSIHLGWNSRNETS---KGNHTTS
         120       130       140       150       160          170  

              190       200       210       220       230       240
pF1KE0 GCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQARLISDANQKLQIGLEMKNG
        :.:  ... :..  ...::.:  ::  .::::. .:..::. :.  ..     .     
NP_071 KCKVQVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHISSWKAATI-----
            180       190       200       210       220            

              250       260       270        280       290         
pF1KE0 ISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFL-HYIIPPTLNDVLIWFGYLNSTF
           .:.::. ::. :::.:.::: :.:   :.  .     :  .:. ...:.:: ::..
NP_071 ----REHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSAL
           230       240       250       260       270       280   

     300       310       320       330                             
pF1KE0 NPMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELSS                    
       ::..:: .   :: . ....  .. ...: . .:                          
NP_071 NPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQ
           290       300       310       320       330       340   

NP_071 VWSGTEVTAPQGATDR
           350         

>>XP_006714928 (OMIM: 142703) PREDICTED: histamine H2 re  (362 aa)
 initn: 570 init1: 345 opt: 450  Z-score: 462.4  bits: 94.0 E(85289): 5.1e-19
Smith-Waterman score: 608; 32.3% identity (65.5% similar) in 316 aa overlap (19-333:14-317)

               10        20        30        40        50        60
pF1KE0 MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVGNLIVIVSISHFKQLHTPTNW
                         :.  . ..  .....:: :..::..: ....  ..:.. :: 
XP_006      MAPNGTASSFCLDSTACKITITVVLAVLILITVAGNVVVCLAVGLNRRLRNLTNC
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KE0 LIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHTSTDIMLSSASIFHLSFISID
       .: :.: .:.::: ::.:.: . .    : ::.:::.:.:: :.:: .:::..: .::.:
XP_006 FIVSLAITDLLLGLLVLPFSAIYQLSCKWSFGKVFCNIYTSLDVMLCTASILNLFMISLD
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KE0 RYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIFLELNFKGAEEIYYKHVHCRG
       :: :: ::::: . .. . . . . . : .  ...:  : :  : ..      :  :  .
XP_006 RYCAVMDPLRYPVLVTPVRVAISLVLIWVISITLSFLSIHLGWNSRNETS---KGNHTTS
         120       130       140       150       160          170  

              190       200       210       220       230       240
pF1KE0 GCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQARLISDANQKLQIGLEMKNG
        :.:  ... :..  ...::.:  ::  .::::. .:..::. :.  ..     .     
XP_006 KCKVQVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHISSWKAATI-----
            180       190       200       210       220            

              250       260       270        280       290         
pF1KE0 ISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFL-HYIIPPTLNDVLIWFGYLNSTF
           .:.::. ::. :::.:.::: :.:   :.  .     :  .:. ...:.:: ::..
XP_006 ----REHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSAL
           230       240       250       260       270       280   

     300       310       320       330                             
pF1KE0 NPMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELSS                    
       ::..:: .   :: . ....  .. ...: . .:                          
XP_006 NPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQ
           290       300       310       320       330       340   

XP_006 VWSGTEVTAPQGATDRNSS
           350       360  

>>NP_001124527 (OMIM: 142703) histamine H2 receptor isof  (397 aa)
 initn: 570 init1: 345 opt: 450  Z-score: 461.9  bits: 94.1 E(85289): 5.4e-19
Smith-Waterman score: 608; 32.3% identity (65.5% similar) in 316 aa overlap (19-333:14-317)

               10        20        30        40        50        60
pF1KE0 MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVGNLIVIVSISHFKQLHTPTNW
                         :.  . ..  .....:: :..::..: ....  ..:.. :: 
NP_001      MAPNGTASSFCLDSTACKITITVVLAVLILITVAGNVVVCLAVGLNRRLRNLTNC
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KE0 LIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHTSTDIMLSSASIFHLSFISID
       .: :.: .:.::: ::.:.: . .    : ::.:::.:.:: :.:: .:::..: .::.:
NP_001 FIVSLAITDLLLGLLVLPFSAIYQLSCKWSFGKVFCNIYTSLDVMLCTASILNLFMISLD
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KE0 RYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIFLELNFKGAEEIYYKHVHCRG
       :: :: ::::: . .. . . . . . : .  ...:  : :  : ..      :  :  .
NP_001 RYCAVMDPLRYPVLVTPVRVAISLVLIWVISITLSFLSIHLGWNSRNETS---KGNHTTS
         120       130       140       150       160          170  

              190       200       210       220       230       240
pF1KE0 GCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQARLISDANQKLQIGLEMKNG
        :.:  ... :..  ...::.:  ::  .::::. .:..::. :.  ..     .     
NP_001 KCKVQVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHISSWKAATI-----
            180       190       200       210       220            

              250       260       270        280       290         
pF1KE0 ISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFL-HYIIPPTLNDVLIWFGYLNSTF
           .:.::. ::. :::.:.::: :.:   :.  .     :  .:. ...:.:: ::..
NP_001 ----REHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSAL
           230       240       250       260       270       280   

     300       310       320       330                             
pF1KE0 NPMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELSS                    
       ::..:: .   :: . ....  .. ...: . .:                          
NP_001 NPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQ
           290       300       310       320       330       340   

NP_001 VWSGTEVTAPQGATDRPWLCLPECWSVELTHSFIHLFIHSFANIHPIPTTCQEL
           350       360       370       380       390       




339 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 07:53:33 2016 done: Sun Nov  6 07:53:34 2016
 Total Scan time:  6.330 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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