FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2362, 275 aa 1>>>pF1KE2362 275 - 275 aa - 275 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3456+/-0.000861; mu= 15.2663+/- 0.052 mean_var=69.4190+/-14.028, 0's: 0 Z-trim(106.5): 6 B-trim: 0 in 0/50 Lambda= 0.153934 statistics sampled from 9033 (9037) to 9033 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.278), width: 16 Scan time: 2.310 The best scores are: opt bits E(32554) CCDS5055.1 ATG5 gene_id:9474|Hs108|chr6 ( 275) 1913 433.7 7e-122 CCDS69159.1 ATG5 gene_id:9474|Hs108|chr6 ( 197) 1367 312.3 1.7e-85 CCDS75498.1 ATG5 gene_id:9474|Hs108|chr6 ( 91) 256 65.4 1.7e-11 >>CCDS5055.1 ATG5 gene_id:9474|Hs108|chr6 (275 aa) initn: 1913 init1: 1913 opt: 1913 Z-score: 2301.7 bits: 433.7 E(32554): 7e-122 Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275) 10 20 30 40 50 60 pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI 190 200 210 220 230 240 250 260 270 pF1KE2 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD ::::::::::::::::::::::::::::::::::: CCDS50 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD 250 260 270 >>CCDS69159.1 ATG5 gene_id:9474|Hs108|chr6 (197 aa) initn: 1367 init1: 1367 opt: 1367 Z-score: 1648.5 bits: 312.3 E(32554): 1.7e-85 Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 196 aa overlap (80-275:2-197) 50 60 70 80 90 100 pF1KE2 DKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPE :::::::::::::::::::::::::::::: CCDS69 MHYPIGLLFDLLASSSALPWNITVHFKSFPE 10 20 30 110 120 130 140 150 160 pF1KE2 KDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 KDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAIN 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE2 RKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 RKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDP 100 110 120 130 140 150 230 240 250 260 270 pF1KE2 EDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD :::::::::::::::::::::::::::::::::::::::::::::: CCDS69 EDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD 160 170 180 190 >>CCDS75498.1 ATG5 gene_id:9474|Hs108|chr6 (91 aa) initn: 269 init1: 256 opt: 256 Z-score: 320.0 bits: 65.4 E(32554): 1.7e-11 Smith-Waterman score: 256; 100.0% identity (100.0% similar) in 36 aa overlap (1-36:1-36) 10 20 30 40 50 60 pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM :::::::::::::::::::::::::::::::::::: CCDS75 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYTDLTSFGPSIGNSWNILQKKMDFV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA CCDS75 ISPLEYIRQRLKDLSFRSCFVLWLQMDSCTH 70 80 90 275 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:31:41 2016 done: Sun Nov 6 16:31:42 2016 Total Scan time: 2.310 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]