FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6178, 118 aa 1>>>pF1KE6178 118 - 118 aa - 118 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2554+/-0.000358; mu= -2.4802+/- 0.022 mean_var=170.1427+/-33.672, 0's: 0 Z-trim(119.7): 24 B-trim: 792 in 1/55 Lambda= 0.098326 statistics sampled from 33990 (34019) to 33990 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.399), width: 16 Scan time: 3.890 The best scores are: opt bits E(85289) NP_569730 (OMIM: 606853) V-type proton ATPase subu ( 118) 753 117.5 5e-27 NP_612139 (OMIM: 606853) V-type proton ATPase subu ( 77) 506 82.4 1.3e-16 NP_004879 (OMIM: 607296) V-type proton ATPase subu ( 118) 497 81.2 4.3e-16 NP_001191007 (OMIM: 606853) V-type proton ATPase s ( 78) 296 52.6 1.2e-07 >>NP_569730 (OMIM: 606853) V-type proton ATPase subunit (118 aa) initn: 753 init1: 753 opt: 753 Z-score: 606.2 bits: 117.5 E(85289): 5e-27 Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 pF1KE6 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_569 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_569 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA 70 80 90 100 110 >>NP_612139 (OMIM: 606853) V-type proton ATPase subunit (77 aa) initn: 506 init1: 506 opt: 506 Z-score: 419.5 bits: 82.4 E(85289): 1.3e-16 Smith-Waterman score: 506; 100.0% identity (100.0% similar) in 77 aa overlap (42-118:1-77) 20 30 40 50 60 70 pF1KE6 LQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQAAMGSQGNLSA :::::::::::::::::::::::::::::: NP_612 MEVEQYRREREHEFQSKQQAAMGSQGNLSA 10 20 30 80 90 100 110 pF1KE6 EVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA ::::::::::::::::::::::::::::::::::::::::::::::: NP_612 EVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA 40 50 60 70 >>NP_004879 (OMIM: 607296) V-type proton ATPase subunit (118 aa) initn: 546 init1: 497 opt: 497 Z-score: 409.9 bits: 81.2 E(85289): 4.3e-16 Smith-Waterman score: 497; 64.1% identity (89.7% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE6 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ ::::::::::::::::::::::..::::: ::::::::::: :.:::: .::.::..:. NP_004 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA ::.::.:. :.:::. :.... .:. ..::..:: .::..:::.::..: ::::. NP_004 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING 70 80 90 100 110 >>NP_001191007 (OMIM: 606853) V-type proton ATPase subun (78 aa) initn: 296 init1: 296 opt: 296 Z-score: 258.4 bits: 52.6 E(85289): 1.2e-07 Smith-Waterman score: 409; 66.1% identity (66.1% similar) in 118 aa overlap (1-118:1-78) 10 20 30 40 50 60 pF1KE6 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ :::::::::::::::::::::::::::::::::::: NP_001 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQA------------------------ 10 20 30 70 80 90 100 110 pF1KE6 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA :::::::::::::::::::::::::::::::::::::::::: NP_001 ----------------TRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA 40 50 60 70 118 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:07:13 2016 done: Tue Nov 8 10:07:14 2016 Total Scan time: 3.890 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]