FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6173, 81 aa 1>>>pF1KE6173 81 - 81 aa - 81 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.4584+/-0.000277; mu= 11.7005+/- 0.017 mean_var=51.0931+/-10.614, 0's: 0 Z-trim(119.7): 4 B-trim: 0 in 0/50 Lambda= 0.179429 statistics sampled from 34026 (34030) to 34026 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.399), width: 16 Scan time: 2.750 The best scores are: opt bits E(85289) NP_003936 (OMIM: 603931) V-type proton ATPase subu ( 81) 594 160.5 2.7e-40 NP_660265 (OMIM: 611019) V-type proton ATPase subu ( 130) 449 123.1 7.9e-29 NP_001276919 (OMIM: 611019) V-type proton ATPase s ( 236) 421 116.0 1.9e-26 NP_001094062 (OMIM: 611019) V-type proton ATPase s ( 213) 262 74.8 4.4e-14 >>NP_003936 (OMIM: 603931) V-type proton ATPase subunit (81 aa) initn: 594 init1: 594 opt: 594 Z-score: 844.4 bits: 160.5 E(85289): 2.7e-40 Smith-Waterman score: 594; 100.0% identity (100.0% similar) in 81 aa overlap (1-81:1-81) 10 20 30 40 50 60 pF1KE6 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQL 10 20 30 40 50 60 70 80 pF1KE6 NPLFGPQLKNETIWYLKYHWP ::::::::::::::::::::: NP_003 NPLFGPQLKNETIWYLKYHWP 70 80 >>NP_660265 (OMIM: 611019) V-type proton ATPase subunit (130 aa) initn: 440 init1: 410 opt: 449 Z-score: 638.6 bits: 123.1 E(85289): 7.9e-29 Smith-Waterman score: 449; 71.2% identity (93.8% similar) in 80 aa overlap (1-80:50-129) 10 20 30 pF1KE6 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPK :. :....:.:....:::.::. :::.:: NP_660 MLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVIIFTTFWGLVGIAGPWFVPK 20 30 40 50 60 70 40 50 60 70 80 pF1KE6 GPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNETIWYLKYHWP ::::::::::::. .::::::::::::::::::::::::::::::... : NP_660 GPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNETIWYVRFLWE 80 90 100 110 120 130 >>NP_001276919 (OMIM: 611019) V-type proton ATPase subun (236 aa) initn: 421 init1: 421 opt: 421 Z-score: 595.7 bits: 116.0 E(85289): 1.9e-26 Smith-Waterman score: 421; 74.3% identity (94.6% similar) in 74 aa overlap (1-74:50-123) 10 20 30 pF1KE6 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPK :. :....:.:....:::.::. :::.:: NP_001 MLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVIIFTTFWGLVGIAGPWFVPK 20 30 40 50 60 70 40 50 60 70 80 pF1KE6 GPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNETIWYLKYHWP ::::::::::::. .::::::::::::::::::::::::::::: NP_001 GPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNETIWCPALGMTVAPLSLTTP 80 90 100 110 120 130 NP_001 SSGPSPTQLCLVTSSLLLAPRDPDPQGLPGSWKSSQSSQPARALGSPGHSSGRGDVLLQY 140 150 160 170 180 190 >>NP_001094062 (OMIM: 611019) V-type proton ATPase subun (213 aa) initn: 224 init1: 214 opt: 262 Z-score: 373.9 bits: 74.8 E(85289): 4.4e-14 Smith-Waterman score: 262; 50.7% identity (77.5% similar) in 71 aa overlap (1-66:50-120) 10 20 30 pF1KE6 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPK :. :....:.:....:::.::. :::.:: NP_001 MLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVIIFTTFWGLVGIAGPWFVPK 20 30 40 50 60 70 40 50 60 70 80 pF1KE6 GPNRGVIITMLVTCSVCCYLF-----WLIAILAQLNPLFGPQLKNETIWYLKYHWP ::::::::::::. .:::::. .: :. .: :: NP_001 GPNRGVIITMLVATAVCCYLLCPALGMTVAPLSLTTPSSGPSPTQLCLVTSSLLLAPRDP 80 90 100 110 120 130 NP_001 DPQGLPGSWKSSQSSQPARALGSPGHSSGRGDVLLQYPHCSGVCPLSQGDAAGELVWVGS 140 150 160 170 180 190 81 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:04:17 2016 done: Tue Nov 8 10:04:18 2016 Total Scan time: 2.750 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]