FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6508, 175 aa 1>>>pF1KE6508 175 - 175 aa - 175 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3682+/-0.000829; mu= 11.5024+/- 0.049 mean_var=55.1086+/-10.998, 0's: 0 Z-trim(105.1): 17 B-trim: 4 in 1/50 Lambda= 0.172769 statistics sampled from 8226 (8230) to 8226 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.253), width: 16 Scan time: 1.300 The best scores are: opt bits E(32554) CCDS3960.1 NDUFS4 gene_id:4724|Hs108|chr5 ( 175) 1140 292.1 1.2e-79 >>CCDS3960.1 NDUFS4 gene_id:4724|Hs108|chr5 (175 aa) initn: 1140 init1: 1140 opt: 1140 Z-score: 1543.5 bits: 292.1 E(32554): 1.2e-79 Smith-Waterman score: 1140; 99.4% identity (100.0% similar) in 175 aa overlap (1-175:1-175) 10 20 30 40 50 60 pF1KE6 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSSWRLAQDQTQDTQLITVDEKLD ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: CCDS39 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSTWRLAQDQTQDTQLITVDEKLD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 LSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 LSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK 130 140 150 160 170 175 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:56:35 2016 done: Tue Nov 8 13:56:35 2016 Total Scan time: 1.300 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]