FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3805, 230 aa 1>>>pF1KE3805 230 - 230 aa - 230 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5779+/-0.000322; mu= 12.2822+/- 0.020 mean_var=68.4331+/-13.773, 0's: 0 Z-trim(115.8): 22 B-trim: 238 in 3/52 Lambda= 0.155039 statistics sampled from 26528 (26550) to 26528 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.311), width: 16 Scan time: 5.540 The best scores are: opt bits E(85289) NP_114122 (OMIM: 611756) ropporin-1-like protein [ ( 230) 1552 355.8 3.5e-98 NP_001188395 (OMIM: 611756) ropporin-1-like protei ( 230) 1552 355.8 3.5e-98 XP_016865436 (OMIM: 611756) PREDICTED: ropporin-1- ( 220) 1336 307.5 1.2e-83 XP_016865435 (OMIM: 611756) PREDICTED: ropporin-1- ( 232) 1336 307.5 1.2e-83 XP_006714566 (OMIM: 611756) PREDICTED: ropporin-1- ( 257) 1336 307.5 1.3e-83 XP_006714567 (OMIM: 611756) PREDICTED: ropporin-1- ( 257) 1336 307.5 1.3e-83 XP_011511236 (OMIM: 611757) PREDICTED: ropporin-1A ( 212) 542 129.9 3.3e-30 NP_001304703 (OMIM: 611757) ropporin-1A isoform a ( 212) 542 129.9 3.3e-30 XP_011511235 (OMIM: 611757) PREDICTED: ropporin-1A ( 212) 542 129.9 3.3e-30 NP_060048 (OMIM: 611757) ropporin-1A isoform a [Ho ( 212) 542 129.9 3.3e-30 NP_001304704 (OMIM: 611757) ropporin-1A isoform b ( 120) 288 73.0 2.6e-13 >>NP_114122 (OMIM: 611756) ropporin-1-like protein [Homo (230 aa) initn: 1552 init1: 1552 opt: 1552 Z-score: 1883.7 bits: 355.8 E(85289): 3.5e-98 Smith-Waterman score: 1552; 99.6% identity (99.6% similar) in 230 aa overlap (1-230:1-230) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: NP_114 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH :::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH 190 200 210 220 230 >>NP_001188395 (OMIM: 611756) ropporin-1-like protein [H (230 aa) initn: 1552 init1: 1552 opt: 1552 Z-score: 1883.7 bits: 355.8 E(85289): 3.5e-98 Smith-Waterman score: 1552; 99.6% identity (99.6% similar) in 230 aa overlap (1-230:1-230) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: NP_001 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH 190 200 210 220 230 >>XP_016865436 (OMIM: 611756) PREDICTED: ropporin-1-like (220 aa) initn: 1352 init1: 1336 opt: 1336 Z-score: 1622.9 bits: 307.5 E(85289): 1.2e-83 Smith-Waterman score: 1336; 99.0% identity (99.5% similar) in 198 aa overlap (1-198:1-198) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: XP_016 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH :::::::::::::::::. XP_016 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLVAISEES 190 200 210 220 >>XP_016865435 (OMIM: 611756) PREDICTED: ropporin-1-like (232 aa) initn: 1352 init1: 1336 opt: 1336 Z-score: 1622.5 bits: 307.5 E(85289): 1.2e-83 Smith-Waterman score: 1336; 99.0% identity (99.5% similar) in 198 aa overlap (1-198:1-198) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: XP_016 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH :::::::::::::::::. XP_016 DVSPLETESYLASLKENMVLSWLSTTRIWREESLMIHRSAMLGSEHGRARRG 190 200 210 220 230 >>XP_006714566 (OMIM: 611756) PREDICTED: ropporin-1-like (257 aa) initn: 1336 init1: 1336 opt: 1336 Z-score: 1621.8 bits: 307.5 E(85289): 1.3e-83 Smith-Waterman score: 1336; 99.0% identity (99.5% similar) in 198 aa overlap (1-198:1-198) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: XP_006 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH :::::::::::::::::. XP_006 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLGRHHLFASPRLFAASEKTIWNKRRVRP 190 200 210 220 230 240 >>XP_006714567 (OMIM: 611756) PREDICTED: ropporin-1-like (257 aa) initn: 1336 init1: 1336 opt: 1336 Z-score: 1621.8 bits: 307.5 E(85289): 1.3e-83 Smith-Waterman score: 1336; 99.0% identity (99.5% similar) in 198 aa overlap (1-198:1-198) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: XP_006 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH :::::::::::::::::. XP_006 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLGRHHLFASPRLFAASEKTIWNKRRVRP 190 200 210 220 230 240 >>XP_011511236 (OMIM: 611757) PREDICTED: ropporin-1A iso (212 aa) initn: 542 init1: 316 opt: 542 Z-score: 663.3 bits: 129.9 E(85289): 3.3e-30 Smith-Waterman score: 542; 39.8% identity (72.8% similar) in 206 aa overlap (15-220:10-212) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: XP_011 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC : . .... :: :::.::.: . .. .: : :: . :: . :...... XP_011 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ..:.:..::::.:: :: ... .:: .::.:. :..:: ::::.::...: :.:..:. XP_011 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH ..: .. .: ..... . .:.: ..:: : :: XP_011 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE 180 190 200 210 >>NP_001304703 (OMIM: 611757) ropporin-1A isoform a [Hom (212 aa) initn: 542 init1: 316 opt: 542 Z-score: 663.3 bits: 129.9 E(85289): 3.3e-30 Smith-Waterman score: 542; 39.8% identity (72.8% similar) in 206 aa overlap (15-220:10-212) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: NP_001 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC : . .... :: :::.::.: . .. .: : :: . :: . :...... NP_001 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ..:.:..::::.:: :: ... .:: .::.:. :..:: ::::.::...: :.:..:. NP_001 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH ..: .. .: ..... . .:.: ..:: : :: NP_001 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE 180 190 200 210 >>XP_011511235 (OMIM: 611757) PREDICTED: ropporin-1A iso (212 aa) initn: 542 init1: 316 opt: 542 Z-score: 663.3 bits: 129.9 E(85289): 3.3e-30 Smith-Waterman score: 542; 39.8% identity (72.8% similar) in 206 aa overlap (15-220:10-212) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: XP_011 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC : . .... :: :::.::.: . .. .: : :: . :: . :...... XP_011 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ..:.:..::::.:: :: ... .:: .::.:. :..:: ::::.::...: :.:..:. XP_011 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH ..: .. .: ..... . .:.: ..:: : :: XP_011 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE 180 190 200 210 >>NP_060048 (OMIM: 611757) ropporin-1A isoform a [Homo s (212 aa) initn: 542 init1: 316 opt: 542 Z-score: 663.3 bits: 129.9 E(85289): 3.3e-30 Smith-Waterman score: 542; 39.8% identity (72.8% similar) in 206 aa overlap (15-220:10-212) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: NP_060 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC : . .... :: :::.::.: . .. .: : :: . :: . :...... NP_060 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ..:.:..::::.:: :: ... .:: .::.:. :..:: ::::.::...: :.:..:. NP_060 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH ..: .. .: ..... . .:.: ..:: : :: NP_060 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE 180 190 200 210 230 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:37:40 2016 done: Sun Nov 6 06:37:41 2016 Total Scan time: 5.540 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]