FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3805, 230 aa 1>>>pF1KE3805 230 - 230 aa - 230 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4425+/-0.000721; mu= 13.0598+/- 0.043 mean_var=64.8790+/-12.669, 0's: 0 Z-trim(108.8): 14 B-trim: 63 in 2/50 Lambda= 0.159229 statistics sampled from 10424 (10431) to 10424 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.32), width: 16 Scan time: 2.140 The best scores are: opt bits E(32554) CCDS3879.1 ROPN1L gene_id:83853|Hs108|chr5 ( 230) 1552 364.9 2.5e-101 CCDS3026.1 ROPN1 gene_id:54763|Hs108|chr3 ( 212) 542 132.9 1.6e-31 CCDS33841.1 ROPN1B gene_id:152015|Hs108|chr3 ( 212) 523 128.5 3.3e-30 >>CCDS3879.1 ROPN1L gene_id:83853|Hs108|chr5 (230 aa) initn: 1552 init1: 1552 opt: 1552 Z-score: 1932.7 bits: 364.9 E(32554): 2.5e-101 Smith-Waterman score: 1552; 99.6% identity (99.6% similar) in 230 aa overlap (1-230:1-230) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: CCDS38 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH 190 200 210 220 230 >>CCDS3026.1 ROPN1 gene_id:54763|Hs108|chr3 (212 aa) initn: 542 init1: 316 opt: 542 Z-score: 679.4 bits: 132.9 E(32554): 1.6e-31 Smith-Waterman score: 542; 39.8% identity (72.8% similar) in 206 aa overlap (15-220:10-212) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: CCDS30 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC : . .... :: :::.::.: . .. .: : :: . :: . :...... CCDS30 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ..:.:..::::.:: :: ... .:: .::.:. :..:: ::::.::...: :.:..:. CCDS30 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH ..: .. .: ..... . .:.: ..:: : :: CCDS30 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE 180 190 200 210 >>CCDS33841.1 ROPN1B gene_id:152015|Hs108|chr3 (212 aa) initn: 531 init1: 305 opt: 523 Z-score: 655.8 bits: 128.5 E(32554): 3.3e-30 Smith-Waterman score: 523; 39.3% identity (71.8% similar) in 206 aa overlap (15-220:10-212) 10 20 30 40 50 60 pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: CCDS33 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC : . . .. :: :::.::.: . .. .: : :: . :: . :...... CCDS33 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS ..:.:..::::.:: :: ... .:: .::.:. :..:: ::::.::...: :.:..:. CCDS33 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH .. .. .: ..... . .:.: ..:: : :: CCDS33 EICASHVSRMLNYIEQEVIG-PDGLITVNDFTQNPRVWLE 180 190 200 210 230 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:37:39 2016 done: Sun Nov 6 06:37:40 2016 Total Scan time: 2.140 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]