FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1827, 345 aa 1>>>pF1KE1827 345 - 345 aa - 345 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2286+/-0.000771; mu= 17.1820+/- 0.046 mean_var=72.9950+/-14.435, 0's: 0 Z-trim(109.1): 77 B-trim: 270 in 2/49 Lambda= 0.150116 statistics sampled from 10592 (10672) to 10592 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.328), width: 16 Scan time: 2.430 The best scores are: opt bits E(32554) CCDS3795.1 PDGFC gene_id:56034|Hs108|chr4 ( 345) 2388 526.1 1.6e-149 CCDS8326.1 PDGFD gene_id:80310|Hs108|chr11 ( 364) 575 133.5 2.6e-31 CCDS41703.1 PDGFD gene_id:80310|Hs108|chr11 ( 370) 575 133.5 2.7e-31 >>CCDS3795.1 PDGFC gene_id:56034|Hs108|chr4 (345 aa) initn: 2388 init1: 2388 opt: 2388 Z-score: 2797.9 bits: 526.1 E(32554): 1.6e-149 Smith-Waterman score: 2388; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345) 10 20 30 40 50 60 pF1KE1 MSLFGLLLLTSALAGQRQGTQAESNLSSKFQFSSNKEQNGVQDPQHERIITVSTNGSIHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 MSLFGLLLLTSALAGQRQGTQAESNLSSKFQFSSNKEQNGVQDPQHERIITVSTNGSIHS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PRFPHTYPRNTVLVWRLVAVEENVWIQLTFDERFGLEDPEDDICKYDFVEVEEPSDGTIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 PRFPHTYPRNTVLVWRLVAVEENVWIQLTFDERFGLEDPEDDICKYDFVEVEEPSDGTIL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GRWCGSGTVPGKQISKGNQIRIRFVSDEYFPSEPGFCIHYNIVMPQFTEAVSPSVLPPSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 GRWCGSGTVPGKQISKGNQIRIRFVSDEYFPSEPGFCIHYNIVMPQFTEAVSPSVLPPSA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LPLDLLNNAITAFSTLEDLIRYLEPERWQLDLEDLYRPTWQLLGKAFVFGRKSRVVDLNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 LPLDLLNNAITAFSTLEDLIRYLEPERWQLDLEDLYRPTWQLLGKAFVFGRKSRVVDLNL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 LTEEVRLYSCTPRNFSVSIREELKRTDTIFWPGCLLVKRCGGNCACCLHNCNECQCVPSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 LTEEVRLYSCTPRNFSVSIREELKRTDTIFWPGCLLVKRCGGNCACCLHNCNECQCVPSK 250 260 270 280 290 300 310 320 330 340 pF1KE1 VTKKYHEVLQLRPKTGVRGLHKSLTDVALEHHEECDCVCRGSTGG ::::::::::::::::::::::::::::::::::::::::::::: CCDS37 VTKKYHEVLQLRPKTGVRGLHKSLTDVALEHHEECDCVCRGSTGG 310 320 330 340 >>CCDS8326.1 PDGFD gene_id:80310|Hs108|chr11 (364 aa) initn: 906 init1: 332 opt: 575 Z-score: 675.5 bits: 133.5 E(32554): 2.6e-31 Smith-Waterman score: 968; 43.5% identity (69.8% similar) in 361 aa overlap (3-339:5-358) 10 20 30 40 50 pF1KE1 MSLFGLLLLTSALAGQRQGTQAESNLSSKFQFSSNKEQNGVQDPQHERIITVSTNGSI .: :. . . . :. . . .. : : ..: ... . .... : :. :: . CCDS83 MHRLIFVYTLICANFCSCRDTSATPQSASIKALRNANLRRDDLY--RRDETIQVKGNGYV 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 HSPRFPHTYPRNTVLVWRLVAVEENVWIQLTFDERFGLEDPEDDICKYDFVEVEEPSDGT .:::::..:::: .:.::: . .::. :::.::..::::. :.:::.:::::::. :. . CCDS83 QSPRFPNSYPRNLLLTWRLHS-QENTRIQLVFDNQFGLEEAENDICRYDFVEVEDISETS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 --ILGRWCGSGTVPGKQISKGNQIRIRFVSDEYFPSEPGFCIHYNIVMPQFTEAV----- : ::::: :: . :. :::.: : ::.:: ..::: :.:.. . .: :. CCDS83 TIIRGRWCGHKEVPPRIKSRTNQIKITFKSDDYFVAKPGFKIYYSL-LEDFQPAAASETN 120 130 140 150 160 170 180 190 200 210 pF1KE1 --------------SPSVLPPSALPLDLLNNAITAFSTLEDLIRYLEPERWQLDLEDLYR :::: :. : : :.. :. :.:.:::..:..:: :: :::..: CCDS83 WESVTSSISGVSYNSPSVTDPT-LIADALDKKIAEFDTVEDLLKYFNPESWQEDLENMYL 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE1 PTWQLLGKAFVFGRKSRVVDLNLLTEEVRLYSCTPRNFSVSIREELKRTDTIFWPGCLLV : . :... :::.: ::. :..... :::::::.::.:::::: ....:.: :::: CCDS83 DTPRYRGRSY-HDRKSKV-DLDRLNDDAKRYSCTPRNYSVNIREELKLANVVFFPRCLLV 240 250 260 270 280 290 280 290 300 310 320 330 pF1KE1 KRCGGNCACCLHNCNECQCVPSKVTKKYHEVLQLRP-KTGVRGLHKS--LTDVALEHHEE .::::::.: : : : .:..::::::::..: . :: :. :.:. :.:::. CCDS83 QRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKRRGRAKTMALVDIQLDHHER 300 310 320 330 340 350 340 pF1KE1 CDCVCRGSTGG :::.: CCDS83 CDCICSSRPPR 360 >>CCDS41703.1 PDGFD gene_id:80310|Hs108|chr11 (370 aa) initn: 906 init1: 332 opt: 575 Z-score: 675.4 bits: 133.5 E(32554): 2.7e-31 Smith-Waterman score: 970; 43.8% identity (69.3% similar) in 365 aa overlap (3-339:5-364) 10 20 30 40 50 pF1KE1 MSLFGLLLLTSALAGQRQGTQAESNLSSKFQFSSN---KEQNGVQD-PQHERIITVST .: :. . . . :. . . .. : : ..: :.: . : .... : :. CCDS41 MHRLIFVYTLICANFCSCRDTSATPQSASIKALRNANLRRDESNHLTDLYRRDETIQVKG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 NGSIHSPRFPHTYPRNTVLVWRLVAVEENVWIQLTFDERFGLEDPEDDICKYDFVEVEEP :: ..:::::..:::: .:.::: . .::. :::.::..::::. :.:::.:::::::. CCDS41 NGYVQSPRFPNSYPRNLLLTWRLHS-QENTRIQLVFDNQFGLEEAENDICRYDFVEVEDI 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 SDGT--ILGRWCGSGTVPGKQISKGNQIRIRFVSDEYFPSEPGFCIHYNIVMPQFTEAV- :. . : ::::: :: . :. :::.: : ::.:: ..::: :.:.. . .: :. CCDS41 SETSTIIRGRWCGHKEVPPRIKSRTNQIKITFKSDDYFVAKPGFKIYYSL-LEDFQPAAA 120 130 140 150 160 170 180 190 200 210 pF1KE1 ------------------SPSVLPPSALPLDLLNNAITAFSTLEDLIRYLEPERWQLDLE :::: :. : : :.. :. :.:.:::..:..:: :: ::: CCDS41 SETNWESVTSSISGVSYNSPSVTDPT-LIADALDKKIAEFDTVEDLLKYFNPESWQEDLE 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE1 DLYRPTWQLLGKAFVFGRKSRVVDLNLLTEEVRLYSCTPRNFSVSIREELKRTDTIFWPG ..: : . :... :::.: ::. :..... :::::::.::.:::::: ....:.: CCDS41 NMYLDTPRYRGRSY-HDRKSKV-DLDRLNDDAKRYSCTPRNYSVNIREELKLANVVFFPR 240 250 260 270 280 290 280 290 300 310 320 330 pF1KE1 CLLVKRCGGNCACCLHNCNECQCVPSKVTKKYHEVLQLRP-KTGVRGLHKS--LTDVALE ::::.::::::.: : : : .:..::::::::..: . :: :. :.:. :. CCDS41 CLLVQRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKRRGRAKTMALVDIQLD 300 310 320 330 340 350 340 pF1KE1 HHEECDCVCRGSTGG :::.:::.: CCDS41 HHERCDCICSSRPPR 360 370 345 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:18:22 2016 done: Sun Nov 6 17:18:22 2016 Total Scan time: 2.430 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]