FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6581, 132 aa 1>>>pF1KE6581 132 - 132 aa - 132 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3966+/-0.000468; mu= 9.8666+/- 0.029 mean_var=56.3210+/-11.543, 0's: 0 Z-trim(107.1): 29 B-trim: 5 in 1/50 Lambda= 0.170899 statistics sampled from 15154 (15181) to 15154 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.541), E-opt: 0.2 (0.178), width: 16 Scan time: 2.600 The best scores are: opt bits E(85289) NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 843 216.3 1.1e-56 NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 280 77.5 6.9e-15 NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 264 73.6 1.1e-13 NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 258 72.1 3.6e-13 XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 251 70.4 9.3e-13 NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 248 69.6 1.6e-12 NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 238 67.2 9e-12 NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 236 66.7 1.3e-11 NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 227 64.5 6.1e-11 XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 227 64.5 6.1e-11 NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 227 64.5 6.1e-11 NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 206 59.3 2.1e-09 NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 194 56.3 1.2e-08 NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 195 56.6 1.5e-08 NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 192 55.9 3.4e-08 NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 185 54.1 7.8e-08 NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 179 52.6 2.2e-07 NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128) 171 50.6 8.2e-07 NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177) 171 50.7 1.1e-06 NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177) 171 50.7 1.1e-06 NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 159 47.7 6.7e-06 NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 143 43.8 0.00012 NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127) 137 42.3 0.00027 NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 138 42.5 0.00028 NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 127 39.8 0.0016 >>NP_000125 (OMIM: 134640) fatty acid-binding protein, i (132 aa) initn: 843 init1: 843 opt: 843 Z-score: 1138.5 bits: 216.3 E(85289): 1.1e-56 Smith-Waterman score: 843; 99.2% identity (100.0% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KE6 MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLAAHDNLKLTITQEGNKFTVKESSAFRNIE ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: NP_000 MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLAAHDNLKLTITQEGNKFTVKESSTFRNIE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VVFELGVTFNYNLADGTELRGTWSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTYVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 VVFELGVTFNYNLADGTELRGTWSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTYVY 70 80 90 100 110 120 130 pF1KE6 EGVEAKRIFKKD :::::::::::: NP_000 EGVEAKRIFKKD 130 >>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa) initn: 270 init1: 227 opt: 280 Z-score: 388.3 bits: 77.5 E(85289): 6.9e-15 Smith-Waterman score: 280; 35.4% identity (70.8% similar) in 130 aa overlap (2-131:4-131) 10 20 30 40 50 pF1KE6 MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLAAHDNLKLTITQEGNKFTVKESSAFRN :: .:::. :.:.:..:. .::... :... . . :.:::.: ... :.:.: NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 IEVVFELGVTFNYNLADGTELRGTWSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTY :. :.:: :. . :: . ... ::.:.::. .... : :.: : :::: ..:.: NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLV-HIQKWD-GKETNFVREIKDGKMVMTL 70 80 90 100 110 120 130 pF1KE6 VYEGVEAKRIFKKD .. : : : ..: NP_001 TFGDVVAVRHYEKA 120 130 >>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa) initn: 264 init1: 219 opt: 264 Z-score: 366.9 bits: 73.6 E(85289): 1.1e-13 Smith-Waterman score: 264; 32.8% identity (70.2% similar) in 131 aa overlap (2-132:4-132) 10 20 30 40 50 pF1KE6 MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLAAHDNLKLTITQEGNKFTVKESSAFRN :: .:::. :.:.: .:...::... :..:. . : ..:. .:.: :.:.: NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 IEVVFELGVTFNYNLADGTELRGTWSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTY :. :.::: :. . :: .... .:.:.::. .... : :.: . :::.: .:. : NP_004 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLV-HLQKWD-GQETTLVRELIDGKLILTL 70 80 90 100 110 120 130 pF1KE6 VYEGVEAKRIFKKD .. . : ..:. NP_004 THGTAVCTRTYEKEA 120 130 >>NP_001305968 (OMIM: 602965) fatty acid-binding protein (166 aa) initn: 270 init1: 227 opt: 258 Z-score: 357.3 bits: 72.1 E(85289): 3.6e-13 Smith-Waterman score: 258; 36.0% identity (71.9% similar) in 114 aa overlap (2-115:4-115) 10 20 30 40 50 pF1KE6 MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLAAHDNLKLTITQEGNKFTVKESSAFRN :: .:::. :.:.:..:. .::... :... . . :.:::.: ... :.:.: NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 IEVVFELGVTFNYNLADGTELRGTWSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTY :. :.:: :. . :: . ... ::.:.::. .... : :.: : :::: ..: NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLV-HIQKWD-GKETNFVREIKDGKMVMVS 70 80 90 100 110 120 130 pF1KE6 VYEGVEAKRIFKKD NP_001 NDNSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM 120 130 140 150 160 >>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind (126 aa) initn: 260 init1: 219 opt: 251 Z-score: 350.0 bits: 70.4 E(85289): 9.3e-13 Smith-Waterman score: 251; 35.1% identity (72.8% similar) in 114 aa overlap (2-115:4-115) 10 20 30 40 50 pF1KE6 MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLAAHDNLKLTITQEGNKFTVKESSAFRN :: .:::. :.:.: .:...::... :..:. . : ..:. .:.: :.:.: XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 IEVVFELGVTFNYNLADGTELRGTWSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTY :. :.::: :. . :: .... .:.:.::. .... : :.: . :::.: .:. XP_011 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLV-HLQKWD-GQETTLVRELIDGKLILME 70 80 90 100 110 120 130 pF1KE6 VYEGVEAKRIFKKD XP_011 KLQLRNVK 120 >>NP_001433 (OMIM: 600434) fatty acid-binding protein, a (132 aa) initn: 240 init1: 214 opt: 248 Z-score: 345.7 bits: 69.6 E(85289): 1.6e-12 Smith-Waterman score: 248; 33.1% identity (67.7% similar) in 130 aa overlap (2-131:4-131) 10 20 30 40 50 pF1KE6 MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLAAHDNLKLTITQEGNKFTVKESSAFRN :: .:::. :::.: .:...::... ::.:. . .. :. .:. .:.: :.:.: NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 IEVVFELGVTFNYNLADGTELRGTWSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTY :. : :: :. :: ....: .:.:. :. : ... .. :: :.:: NP_001 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKRE--DDKLVVEC 70 80 90 100 110 120 130 pF1KE6 VYEGVEAKRIFKKD :..:: . :.... NP_001 VMKGVTSTRVYERA 120 130 >>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa) initn: 224 init1: 188 opt: 238 Z-score: 332.3 bits: 67.2 E(85289): 9e-12 Smith-Waterman score: 238; 31.0% identity (68.2% similar) in 129 aa overlap (3-131:5-131) 10 20 30 40 50 pF1KE6 MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLAAHDNLKLTITQEGNKFTVKESSAFRN : .:::. :::.: .:. .::... :::. . . :...:. .:.. :.:.: NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 IEVVFELGVTFNYNLADGTELRGTWSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTY :. :.:: :. . ::. . .. .:. ..: .. .: : :.: . :.... ..: NP_002 TEISFKLGQEFEETTADNRKTKSIVTLQRGSL-NQVQRWD-GKETTIKRKLVNGKMVAEC 70 80 90 100 110 120 130 pF1KE6 VYEGVEAKRIFKKD ..:: ::..: NP_002 KMKGVVCTRIYEKV 120 130 >>NP_004369 (OMIM: 180230) cellular retinoic acid-bindin (137 aa) initn: 168 init1: 98 opt: 236 Z-score: 329.4 bits: 66.7 E(85289): 1.3e-11 Smith-Waterman score: 236; 31.3% identity (63.4% similar) in 134 aa overlap (3-132:4-137) 10 20 30 40 50 pF1KE6 MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLA--AHDNLKLTITQEGNKFTVKESSAFR : .:::. :::.:.... .::: . ::.: : .. .. : :.:..: .: :.. : NP_004 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 NIEVVFELGVTFNYNLADGTELRG--TWSLEGNKLIGKFKRTDNGNELNTVREIIGDELV . :. :..: :. . .:: . :. :: :.. . .: . .::. .:::. NP_004 TTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDELI 70 80 90 100 110 120 120 130 pF1KE6 QTYVYEGVEAKRIFKKD :. . : ::. .. NP_004 LTFGADDVVCTRIYVRE 130 >>NP_001869 (OMIM: 180231) cellular retinoic acid-bindin (138 aa) initn: 185 init1: 100 opt: 227 Z-score: 317.4 bits: 64.5 E(85289): 6.1e-11 Smith-Waterman score: 227; 30.9% identity (64.7% similar) in 136 aa overlap (3-132:4-138) 10 20 30 40 50 pF1KE6 MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLAAHDNLK--LTITQEGNKFTVKESSAFR :...::. ::::...... .:::.. ::.:. : . : :::. : .: :.. : NP_001 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 NIEVVFELGVTFNYNLADGTELRGT--WSLEGNKLIGKFKRTDN-GNELNTVREIIGD-E . :. :..: :. . .:: .. : : ::.. . : . : . . .::. .: : NP_001 TTEINFKVGEEFEEQTVDGRPCKSLVKWESE-NKMVCEQKLLKGEGPKTSWTRELTNDGE 70 80 90 100 110 120 130 pF1KE6 LVQTYVYEGVEAKRIFKKD :. :.. . : :.. .. NP_001 LILTMTADDVVCTRVYVRE 120 130 >>XP_016855832 (OMIM: 180231) PREDICTED: cellular retino (138 aa) initn: 185 init1: 100 opt: 227 Z-score: 317.4 bits: 64.5 E(85289): 6.1e-11 Smith-Waterman score: 227; 30.9% identity (64.7% similar) in 136 aa overlap (3-132:4-138) 10 20 30 40 50 pF1KE6 MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLAAHDNLK--LTITQEGNKFTVKESSAFR :...::. ::::...... .:::.. ::.:. : . : :::. : .: :.. : XP_016 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 NIEVVFELGVTFNYNLADGTELRGT--WSLEGNKLIGKFKRTDN-GNELNTVREIIGD-E . :. :..: :. . .:: .. : : ::.. . : . : . . .::. .: : XP_016 TTEINFKVGEEFEEQTVDGRPCKSLVKWESE-NKMVCEQKLLKGEGPKTSWTRELTNDGE 70 80 90 100 110 120 130 pF1KE6 LVQTYVYEGVEAKRIFKKD :. :.. . : :.. .. XP_016 LILTMTADDVVCTRVYVRE 120 130 132 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:34:39 2016 done: Tue Nov 8 14:34:40 2016 Total Scan time: 2.600 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]