FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2050, 671 aa 1>>>pF1KE2050 671 - 671 aa - 671 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2161+/-0.000913; mu= 7.2246+/- 0.055 mean_var=147.0053+/-28.731, 0's: 0 Z-trim(110.7): 12 B-trim: 0 in 0/54 Lambda= 0.105781 statistics sampled from 11773 (11778) to 11773 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.362), width: 16 Scan time: 3.600 The best scores are: opt bits E(32554) CCDS3506.1 SRP72 gene_id:6731|Hs108|chr4 ( 671) 4351 675.8 5.3e-194 CCDS58898.1 SRP72 gene_id:6731|Hs108|chr4 ( 610) 2578 405.2 1.4e-112 >>CCDS3506.1 SRP72 gene_id:6731|Hs108|chr4 (671 aa) initn: 4351 init1: 4351 opt: 4351 Z-score: 3596.4 bits: 675.8 E(32554): 5.3e-194 Smith-Waterman score: 4351; 100.0% identity (100.0% similar) in 671 aa overlap (1-671:1-671) 10 20 30 40 50 60 pF1KE2 MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 FKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 RLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 RLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 NTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 NTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 RTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 RTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 KQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 KQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIEL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 LQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 LQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEE 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 DIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 DIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 IHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 IHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGD 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGK 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 GTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 GTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQ 610 620 630 640 650 660 670 pF1KE2 QKKKKGGKGGW ::::::::::: CCDS35 QKKKKGGKGGW 670 >>CCDS58898.1 SRP72 gene_id:6731|Hs108|chr4 (610 aa) initn: 2578 init1: 2578 opt: 2578 Z-score: 2134.8 bits: 405.2 E(32554): 1.4e-112 Smith-Waterman score: 3840; 90.9% identity (90.9% similar) in 671 aa overlap (1-671:1-610) 10 20 30 40 50 60 pF1KE2 MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 FKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 RLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 RLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 NTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQG ::::::::::::::::::::::::::::::::::: CCDS58 NTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTD------------------------- 190 200 210 250 260 270 280 290 300 pF1KE2 RTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK :::::::::::::::::::::::: CCDS58 ------------------------------------QNVFDSKKKVKLTNAEGVEFKLSK 220 230 310 320 330 340 350 360 pF1KE2 KQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 KQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIEL 240 250 260 270 280 290 370 380 390 400 410 420 pF1KE2 LQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 LQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEE 300 310 320 330 340 350 430 440 450 460 470 480 pF1KE2 DIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 DIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD 360 370 380 390 400 410 490 500 510 520 530 540 pF1KE2 IHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 IHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGD 420 430 440 450 460 470 550 560 570 580 590 600 pF1KE2 SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGK 480 490 500 510 520 530 610 620 630 640 650 660 pF1KE2 GTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 GTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQ 540 550 560 570 580 590 670 pF1KE2 QKKKKGGKGGW ::::::::::: CCDS58 QKKKKGGKGGW 600 610 671 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:30:04 2016 done: Sun Nov 6 17:30:05 2016 Total Scan time: 3.600 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]