FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6166, 80 aa 1>>>pF1KE6166 80 - 80 aa - 80 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0016+/-0.000582; mu= 8.2296+/- 0.035 mean_var=41.4745+/- 8.221, 0's: 0 Z-trim(109.2): 6 B-trim: 0 in 0/49 Lambda= 0.199152 statistics sampled from 10703 (10705) to 10703 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.329), width: 16 Scan time: 1.200 The best scores are: opt bits E(32554) CCDS3472.2 COX7B2 gene_id:170712|Hs108|chr4 ( 81) 547 163.6 1.2e-41 CCDS14437.1 COX7B gene_id:1349|Hs108|chrX ( 80) 428 129.4 2.3e-31 >>CCDS3472.2 COX7B2 gene_id:170712|Hs108|chr4 (81 aa) initn: 547 init1: 547 opt: 547 Z-score: 861.1 bits: 163.6 E(32554): 1.2e-41 Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:2-81) 10 20 30 40 50 pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ 10 20 30 40 50 60 60 70 80 pF1KE6 IGIEWNLSPVGRVTPKEWKHQ ::::::::::::::::::::: CCDS34 IGIEWNLSPVGRVTPKEWKHQ 70 80 >>CCDS14437.1 COX7B gene_id:1349|Hs108|chrX (80 aa) initn: 435 init1: 428 opt: 428 Z-score: 676.4 bits: 129.4 E(32554): 2.3e-31 Smith-Waterman score: 428; 70.0% identity (96.2% similar) in 80 aa overlap (1-80:1-80) 10 20 30 40 50 60 pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQI ::::...::. :...:: :.:::.:: :..:::::::::::::::..::..::...:::. CCDS14 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 10 20 30 40 50 60 70 80 pF1KE6 GIEWNLSPVGRVTPKEWKHQ :::::::::::::::::..: CCDS14 GIEWNLSPVGRVTPKEWRNQ 70 80 80 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:00:41 2016 done: Tue Nov 8 10:00:41 2016 Total Scan time: 1.200 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]