FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9286, 268 aa 1>>>pF1KE9286 268 - 268 aa - 268 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9794+/-0.000834; mu= 12.1466+/- 0.050 mean_var=80.0160+/-15.848, 0's: 0 Z-trim(108.4): 13 B-trim: 122 in 1/49 Lambda= 0.143379 statistics sampled from 10202 (10210) to 10202 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.314), width: 16 Scan time: 1.570 The best scores are: opt bits E(32554) CCDS3182.1 MLF1 gene_id:4291|Hs108|chr3 ( 268) 1804 382.4 1.8e-106 CCDS46945.1 MLF1 gene_id:4291|Hs108|chr3 ( 243) 1636 347.6 4.9e-96 CCDS56287.1 MLF1 gene_id:4291|Hs108|chr3 ( 258) 1362 290.9 5.9e-79 CCDS56286.1 MLF1 gene_id:4291|Hs108|chr3 ( 299) 1362 291.0 6.7e-79 CCDS56288.1 MLF1 gene_id:4291|Hs108|chr3 ( 200) 881 191.4 4.3e-49 CCDS8559.1 MLF2 gene_id:8079|Hs108|chr12 ( 248) 544 121.7 4.9e-28 >>CCDS3182.1 MLF1 gene_id:4291|Hs108|chr3 (268 aa) initn: 1804 init1: 1804 opt: 1804 Z-score: 2024.8 bits: 382.4 E(32554): 1.8e-106 Smith-Waterman score: 1804; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268) 10 20 30 40 50 60 pF1KE9 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 PKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 PKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS 190 200 210 220 230 240 250 260 pF1KE9 PAIEHGRRSNVLGDKLHIKGSSVKSNKK :::::::::::::::::::::::::::: CCDS31 PAIEHGRRSNVLGDKLHIKGSSVKSNKK 250 260 >>CCDS46945.1 MLF1 gene_id:4291|Hs108|chr3 (243 aa) initn: 1636 init1: 1636 opt: 1636 Z-score: 1837.7 bits: 347.6 E(32554): 4.9e-96 Smith-Waterman score: 1636; 100.0% identity (100.0% similar) in 243 aa overlap (26-268:1-243) 10 20 30 40 50 60 pF1KE9 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG ::::::::::::::::::::::::::::::::::: CCDS46 MRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG 10 20 30 70 80 90 100 110 120 pF1KE9 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEP 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE9 PKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 PKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE9 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS 160 170 180 190 200 210 250 260 pF1KE9 PAIEHGRRSNVLGDKLHIKGSSVKSNKK :::::::::::::::::::::::::::: CCDS46 PAIEHGRRSNVLGDKLHIKGSSVKSNKK 220 230 240 >>CCDS56287.1 MLF1 gene_id:4291|Hs108|chr3 (258 aa) initn: 1629 init1: 1362 opt: 1362 Z-score: 1531.0 bits: 290.9 E(32554): 5.9e-79 Smith-Waterman score: 1596; 94.2% identity (94.2% similar) in 258 aa overlap (26-268:1-258) 10 20 30 40 50 60 pF1KE9 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG ::::::::::::::::::::::::::::::::::: CCDS56 MRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG 10 20 30 70 80 90 100 pF1KE9 EDSLT---------------HTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSF ::::: :::::::::::::::::::::::::::::::::::::::: CCDS56 EDSLTATSCSLVPFGDFGGMHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSF 40 50 60 70 80 90 110 120 130 140 150 160 pF1KE9 CSSSVMTYSKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 CSSSVMTYSKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAH 100 110 120 130 140 150 170 180 190 200 210 220 pF1KE9 VIKKSKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 VIKKSKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHEN 160 170 180 190 200 210 230 240 250 260 pF1KE9 PGSRELKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK ::::::::::::::::::::::::::::::::::::::::::: CCDS56 PGSRELKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK 220 230 240 250 >>CCDS56286.1 MLF1 gene_id:4291|Hs108|chr3 (299 aa) initn: 1690 init1: 1362 opt: 1362 Z-score: 1530.0 bits: 291.0 E(32554): 6.7e-79 Smith-Waterman score: 1658; 94.1% identity (94.4% similar) in 269 aa overlap (15-268:31-299) 10 20 30 40 pF1KE9 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSI .::::::::::::::::::::::::::::: CCDS56 MLKEVLQREGKSYKSETLMYIKKARASENKLSESILAHRENMRQMIRSFSEPFGRDLLSI 10 20 30 40 50 60 50 60 70 80 pF1KE9 SDGRGRAHNRRGHNDGEDSLT---------------HTDVSSFQTMDQMVSNMRNYMQKL ::::::::::::::::::::: :::::::::::::::::::::::: CCDS56 SDGRGRAHNRRGHNDGEDSLTATSCSLVPFGDFGGMHTDVSSFQTMDQMVSNMRNYMQKL 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE9 ERNFGQLSVDPNGHSFCSSSVMTYSKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 ERNFGQLSVDPNGHSFCSSSVMTYSKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDS 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE9 GLEKMAIGHHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 GLEKMAIGHHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPG 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE9 RHNLGNTRMRSVGHENPGSRELKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 RHNLGNTRMRSVGHENPGSRELKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK 250 260 270 280 290 >>CCDS56288.1 MLF1 gene_id:4291|Hs108|chr3 (200 aa) initn: 1327 init1: 881 opt: 881 Z-score: 994.9 bits: 191.4 E(32554): 4.3e-49 Smith-Waterman score: 1245; 82.3% identity (82.3% similar) in 243 aa overlap (26-268:1-200) 10 20 30 40 50 60 pF1KE9 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG ::::::::::::::::::::::::::::::::::: CCDS56 MRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG 10 20 30 70 80 90 100 110 120 pF1KE9 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEP ::::::::::::::::::::::::::::::::: CCDS56 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNF--------------------------- 40 50 60 130 140 150 160 170 180 pF1KE9 PKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV :::::::::::::::::::::::::::::::::::::::::::: CCDS56 ----------------IKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV 70 80 90 100 110 190 200 210 220 230 240 pF1KE9 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS 120 130 140 150 160 170 250 260 pF1KE9 PAIEHGRRSNVLGDKLHIKGSSVKSNKK :::::::::::::::::::::::::::: CCDS56 PAIEHGRRSNVLGDKLHIKGSSVKSNKK 180 190 200 >>CCDS8559.1 MLF2 gene_id:8079|Hs108|chr12 (248 aa) initn: 549 init1: 460 opt: 544 Z-score: 616.8 bits: 121.7 E(32554): 4.9e-28 Smith-Waterman score: 544; 39.1% identity (68.6% similar) in 258 aa overlap (1-248:1-245) 10 20 30 40 50 pF1KE9 MFRMLNSSFEDDPFFSESILA-HRENMRQMIRSFSEPFGRD-LLSISDGR--G-RAHNRR :::.. . .::.: . .: ::..: .:. : :: . .:::.:: : : .:: CCDS85 MFRFMRDVEPEDPMFLMDPFAIHRQHMSRML---SGGFGYSPFLSITDGNMPGTRPASRR 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 GHNDGEDSLTHTDVSSFQT--MDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTY .. : :: : :. .: ..:. . :. .... : ..: ::.:..: CCDS85 MQQAGA-------VSPFGMLGMSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISY 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 SKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNK :. :: :::.: ... : :::::.:::...::::::::.:.:::::.::::....:.:. CCDS85 SNTGDGAPKVYQETSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNH 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE9 KTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVG---HENPGSRE .:::.: :..::..::.: :::.::. :. ... : : :..: : .. : . CCDS85 RTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRP-LEFRRLESSGAGGRRAEGPPR 180 190 200 210 220 240 250 260 pF1KE9 LKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK : . :..::. ...:: CCDS85 LAI-QGPEDSPS-RQSRRYDW 230 240 268 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:20:52 2016 done: Tue Nov 8 10:20:53 2016 Total Scan time: 1.570 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]