FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8949, 324 aa 1>>>pF1KB8949 324 - 324 aa - 324 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.1165+/-0.000858; mu= 8.8053+/- 0.053 mean_var=266.8166+/-54.354, 0's: 0 Z-trim(117.1): 8 B-trim: 163 in 1/54 Lambda= 0.078518 statistics sampled from 17737 (17745) to 17737 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.545), width: 16 Scan time: 2.470 The best scores are: opt bits E(32554) CCDS3152.1 SIAH2 gene_id:6478|Hs108|chr3 ( 324) 2288 271.3 7.6e-73 CCDS10735.1 SIAH1 gene_id:6477|Hs108|chr16 ( 282) 1552 187.8 8.7e-48 CCDS32444.1 SIAH1 gene_id:6477|Hs108|chr16 ( 313) 1552 187.9 9.2e-48 CCDS41883.1 SIAH3 gene_id:283514|Hs108|chr13 ( 269) 660 86.7 2.2e-17 >>CCDS3152.1 SIAH2 gene_id:6478|Hs108|chr3 (324 aa) initn: 2288 init1: 2288 opt: 2288 Z-score: 1421.3 bits: 271.3 E(32554): 7.6e-73 Smith-Waterman score: 2288; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324) 10 20 30 40 50 60 pF1KB8 MSRPSSTGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MSRPSSTGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 GGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 GGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 SIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 LEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 GHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLVFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 GHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLVFD 250 260 270 280 290 300 310 320 pF1KB8 TAIAHLFADNGNLGINVTISTCCP :::::::::::::::::::::::: CCDS31 TAIAHLFADNGNLGINVTISTCCP 310 320 >>CCDS10735.1 SIAH1 gene_id:6477|Hs108|chr16 (282 aa) initn: 1563 init1: 1243 opt: 1552 Z-score: 971.4 bits: 187.8 E(32554): 8.7e-48 Smith-Waterman score: 1552; 77.6% identity (89.2% similar) in 286 aa overlap (37-322:5-282) 10 20 30 40 50 60 pF1KB8 TGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGAGP : .: :.: : . : :. : CCDS10 MSRQTATALPTGTSKCPPSQRV---PALTG---- 10 20 70 80 90 100 110 120 pF1KB8 VSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTPSIRNLA .. ....:.::::::::::::::::::::.:::::..:: ::.::::::: : :::::: CCDS10 TTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLG-SIRNLA 30 40 50 60 70 80 130 140 150 160 170 180 pF1KB8 MEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMS :::::..::::::::..:: .:: :::: .::..::.::::::::::::::::::.::: CCDS10 MEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMP 90 100 110 120 130 140 190 200 210 220 230 240 pF1KB8 HLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFF :::: ::::::::::::::::::::::::::::::::::: ::::::::::::.:::::: CCDS10 HLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFF 150 160 170 180 190 200 250 260 270 280 290 300 pF1KB8 AIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHL ::: :::::::::::::::::::.::::::::::::::.:.:.::::::::::::.::.: CCDS10 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 210 220 230 240 250 260 310 320 pF1KB8 FADNGNLGINVTISTCCP ::.::::::::::: : CCDS10 FAENGNLGINVTISMC 270 280 >>CCDS32444.1 SIAH1 gene_id:6477|Hs108|chr16 (313 aa) initn: 1563 init1: 1243 opt: 1552 Z-score: 970.9 bits: 187.9 E(32554): 9.2e-48 Smith-Waterman score: 1552; 77.6% identity (89.2% similar) in 286 aa overlap (37-322:36-313) 10 20 30 40 50 60 pF1KB8 TGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGAGP : .: :.: : . : :. : CCDS32 TPPSLYSWRGVLFTCLPAARTRKRKEMSRQTATALPTGTSKCPPSQRV---PALTG---- 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 VSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTPSIRNLA .. ....:.::::::::::::::::::::.:::::..:: ::.::::::: : :::::: CCDS32 TTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLG-SIRNLA 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB8 MEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMS :::::..::::::::..:: .:: :::: .::..::.::::::::::::::::::.::: CCDS32 MEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMP 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB8 HLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFF :::: ::::::::::::::::::::::::::::::::::: ::::::::::::.:::::: CCDS32 HLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFF 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB8 AIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHL ::: :::::::::::::::::::.::::::::::::::.:.:.::::::::::::.::.: CCDS32 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 240 250 260 270 280 290 310 320 pF1KB8 FADNGNLGINVTISTCCP ::.::::::::::: : CCDS32 FAENGNLGINVTISMC 300 310 >>CCDS41883.1 SIAH3 gene_id:283514|Hs108|chr13 (269 aa) initn: 657 init1: 536 opt: 660 Z-score: 425.6 bits: 86.7 E(32554): 2.2e-17 Smith-Waterman score: 660; 54.1% identity (79.7% similar) in 172 aa overlap (149-320:90-258) 120 130 140 150 160 170 pF1KB8 TPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQ ::: : : . : : :: ::.:. CCDS41 QGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHAN--PVTPCLCMCPLFSCQWE 60 70 80 90 100 110 180 190 200 210 220 230 pF1KB8 GSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEK : ::.:. :: . :. . ::: .:::::::..::. .::..:.::.::::.:::.:::. CCDS41 GRLEVVVPHLRQIHR-VDILQGAEIVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQER 120 130 140 150 160 170 240 250 260 270 280 290 pF1KB8 YEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLV .::: :::: ..:::: ::. :.:::::: :.::: :::::::. . : ..: ..:::: CCDS41 HEGHPQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVLECVDSVITDGDCLV 180 190 200 210 220 230 300 310 320 pF1KB8 FDTAIAHLFADNGNLGINVTISTCCP ..:..:.::.:::.:.:...:. CCDS41 LNTSLAQLFSDNGSLAIGIAITATEVLPSEAEM 240 250 260 324 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:40:38 2016 done: Sun Nov 6 17:40:39 2016 Total Scan time: 2.470 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]