FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6612, 311 aa
  1>>>pF1KE6612 311 - 311 aa - 311 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7322+/-0.00085; mu= 13.0048+/- 0.051
 mean_var=63.7667+/-12.806, 0's: 0 Z-trim(105.5): 23  B-trim: 31 in 1/48
 Lambda= 0.160612
 statistics sampled from 8460 (8479) to 8460 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.26), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS3093.1 IL20RB gene_id:53833|Hs108|chr3         ( 311) 2103 496.0 1.5e-140


>>CCDS3093.1 IL20RB gene_id:53833|Hs108|chr3              (311 aa)
 initn: 2103 init1: 2103 opt: 2103  Z-score: 2636.6  bits: 496.0 E(32554): 1.5e-140
Smith-Waterman score: 2103; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KE6 MQTFTMVLEEIWTSLFMWFFYALIPCLLTDEVAILPAPQNLSVLSTNMKHLLMWSPVIAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MQTFTMVLEEIWTSLFMWFFYALIPCLLTDEVAILPAPQNLSVLSTNMKHLLMWSPVIAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TSAWSILKHPFNRNSTILTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TSAWSILKHPFNRNSTILTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 KMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIPLVLALFAF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VGFMLILVVVPLFVWKMGRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VGFMLILVVVPLFVWKMGRLLQYSCCPVVVLPDTLKITNSPQKLISCRREEVDACATAVM
              250       260       270       280       290       300

              310 
pF1KE6 SPEELLRAWIS
       :::::::::::
CCDS30 SPEELLRAWIS
              310 




311 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:46:11 2016 done: Tue Nov  8 14:46:11 2016
 Total Scan time:  1.760 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]