FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5423, 348 aa 1>>>pF1KE5423 348 - 348 aa - 348 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4713+/-0.000716; mu= 15.3772+/- 0.043 mean_var=69.6225+/-14.234, 0's: 0 Z-trim(109.8): 10 B-trim: 351 in 2/51 Lambda= 0.153709 statistics sampled from 11167 (11172) to 11167 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.343), width: 16 Scan time: 2.710 The best scores are: opt bits E(32554) CCDS3071.1 MRPL3 gene_id:11222|Hs108|chr3 ( 348) 2438 549.4 1.6e-156 >>CCDS3071.1 MRPL3 gene_id:11222|Hs108|chr3 (348 aa) initn: 2438 init1: 2438 opt: 2438 Z-score: 2923.4 bits: 549.4 E(32554): 1.6e-156 Smith-Waterman score: 2438; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348) 10 20 30 40 50 60 pF1KE5 MPGWRLLTQVGAQVLGRLGDGLGAALGPGNRTHIWLFVRGLHGKSGTWWDEHLSEENVPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 MPGWRLLTQVGAQVLGRLGDGLGAALGPGNRTHIWLFVRGLHGKSGTWWDEHLSEENVPF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IKQLVSDEDKAQLASKLCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWTKDGQKHVVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 IKQLVSDEDKAQLASKLCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWTKDGQKHVVT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 LLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 ITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 ITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 GAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 GAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVK 250 260 270 280 290 300 310 320 330 340 pF1KE5 DSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITFA :::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 DSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITFA 310 320 330 340 348 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:36:58 2016 done: Tue Nov 8 00:36:59 2016 Total Scan time: 2.710 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]