FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3021, 108 aa 1>>>pF1KE3021 108 - 108 aa - 108 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3156+/-0.000553; mu= 16.0699+/- 0.033 mean_var=71.2900+/-13.764, 0's: 0 Z-trim(115.1): 17 B-trim: 46 in 1/49 Lambda= 0.151901 statistics sampled from 15597 (15613) to 15597 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.48), width: 16 Scan time: 1.550 The best scores are: opt bits E(32554) CCDS2916.1 PROK2 gene_id:60675|Hs108|chr3 ( 108) 792 181.0 1.2e-46 CCDS46868.1 PROK2 gene_id:60675|Hs108|chr3 ( 129) 535 124.8 1.2e-29 CCDS825.1 PROK1 gene_id:84432|Hs108|chr1 ( 105) 408 96.9 2.6e-21 >>CCDS2916.1 PROK2 gene_id:60675|Hs108|chr3 (108 aa) initn: 792 init1: 792 opt: 792 Z-score: 950.8 bits: 181.0 E(32554): 1.2e-46 Smith-Waterman score: 792; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108) 10 20 30 40 50 60 pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 10 20 30 40 50 60 70 80 90 100 pF1KE3 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK :::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK 70 80 90 100 >>CCDS46868.1 PROK2 gene_id:60675|Hs108|chr3 (129 aa) initn: 532 init1: 532 opt: 535 Z-score: 645.5 bits: 124.8 E(32554): 1.2e-29 Smith-Waterman score: 740; 83.7% identity (83.7% similar) in 129 aa overlap (1-108:1-129) 10 20 30 40 50 60 pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 10 20 30 40 50 60 70 80 90 pF1KE3 MGKLGDSCHPLTRK---------------------VPFFGRRMHHTCPCLPGLACLRTSF :::::::::::::: ::::::::::::::::::::::::: CCDS46 MGKLGDSCHPLTRKNNFGNGRQERRKRKRSKRKKEVPFFGRRMHHTCPCLPGLACLRTSF 70 80 90 100 110 120 100 pF1KE3 NRFICLAQK ::::::::: CCDS46 NRFICLAQK >>CCDS825.1 PROK1 gene_id:84432|Hs108|chr1 (105 aa) initn: 429 init1: 393 opt: 408 Z-score: 496.1 bits: 96.9 E(32554): 2.6e-21 Smith-Waterman score: 408; 55.2% identity (80.5% similar) in 87 aa overlap (18-104:10-96) 10 20 30 40 50 60 pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP .:: ..: :::::::..: :::.: :::.:.:....:.::: CCDS82 MRGATRVSIMLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTP 10 20 30 40 50 70 80 90 100 pF1KE3 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK .:. :. ::: ..::::: .: ::::::::.: : : .:. : CCDS82 LGREGEECHPGSHKVPFFRKRKHHTCPCLPNLLCSRFPDGRYRCSMDLKNINF 60 70 80 90 100 108 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:44:47 2016 done: Sun Nov 6 17:44:47 2016 Total Scan time: 1.550 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]