FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6568, 188 aa 1>>>pF1KE6568 188 - 188 aa - 188 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9096+/-0.000422; mu= 15.0497+/- 0.026 mean_var=61.6150+/-13.003, 0's: 0 Z-trim(110.4): 36 B-trim: 0 in 0/53 Lambda= 0.163392 statistics sampled from 18755 (18778) to 18755 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.583), E-opt: 0.2 (0.22), width: 16 Scan time: 3.420 The best scores are: opt bits E(85289) NP_006398 (OMIM: 605709) PRA1 family protein 3 [Ho ( 188) 1233 299.2 2.6e-81 NP_009144 (OMIM: 300840) PRA1 family protein 2 [Ho ( 178) 548 137.7 1e-32 NP_006414 (OMIM: 604925) prenylated Rab acceptor p ( 185) 135 40.3 0.0021 >>NP_006398 (OMIM: 605709) PRA1 family protein 3 [Homo s (188 aa) initn: 1233 init1: 1233 opt: 1233 Z-score: 1580.7 bits: 299.2 E(85289): 2.6e-81 Smith-Waterman score: 1233; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KE6 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT 130 140 150 160 170 180 pF1KE6 DYISKVKE :::::::: NP_006 DYISKVKE >>NP_009144 (OMIM: 300840) PRA1 family protein 2 [Homo s (178 aa) initn: 541 init1: 541 opt: 548 Z-score: 708.3 bits: 137.7 E(85289): 1e-32 Smith-Waterman score: 548; 45.7% identity (82.7% similar) in 173 aa overlap (2-174:3-175) 10 20 30 40 50 pF1KE6 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVG .: . :::: ::: :: :.: :: : ..: .::..::::::::::. .. ....: NP_009 MSEVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 FLSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGV .. :.. .:...::.... .::::... ..:: .. .:.. . .:. .. ... . ::. NP_009 YVRPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGA 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE6 MVFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRL .:.:.:. :.::...::::::::::::.:::.:.:::::::::..:.:: :..: NP_009 CTFLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQEAGS 130 140 150 160 170 180 pF1KE6 TDYISKVKE >>NP_006414 (OMIM: 604925) prenylated Rab acceptor prote (185 aa) initn: 123 init1: 78 opt: 135 Z-score: 182.0 bits: 40.3 E(85289): 0.0021 Smith-Waterman score: 135; 23.7% identity (58.6% similar) in 152 aa overlap (6-155:40-185) 10 20 30 pF1KE6 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNR : .: :. : ..::.:: :.... .: NP_006 DAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVD-QQRFSRP--RNLGELCQR 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 VVSNLLYYQTNYLVVAAMMISIVGFLSPFNMILGGIVVVLVFTGFVWAAHNKDVL--RRM .: :. :::.::. : .: ::. .. .. . .. . ..: :: :.. NP_006 LVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLVLFGREV 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 KKRYPTTFVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLENKME . . ... . . .: .. :... .:.: : :... ::... . . : .:: NP_006 SPAHQYALAGGISFP-FFWLAGAGSAVFWVLGAT--LVVIGSHAAFHQIEAVDGEELQME 130 140 150 160 170 180 160 170 180 pF1KE6 GIGLKRTPMGIVLDALEQQEEGINRLTDYISKVKE . NP_006 PV 188 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:29:06 2016 done: Tue Nov 8 14:29:07 2016 Total Scan time: 3.420 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]