Result of FASTA (omim) for pFN21AE5248
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5248, 204 aa
  1>>>pF1KE5248 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6535+/-0.000392; mu= 8.9272+/- 0.024
 mean_var=140.0252+/-27.332, 0's: 0 Z-trim(116.1): 4  B-trim: 305 in 1/56
 Lambda= 0.108385
 statistics sampled from 26940 (26944) to 26940 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.316), width:  16
 Scan time:  6.060

The best scores are:                                      opt bits E(85289)
NP_079351 (OMIM: 611965) THO complex subunit 7 hom ( 204) 1326 218.3 7.1e-57
NP_001272316 (OMIM: 611965) THO complex subunit 7  ( 152)  975 163.3 1.9e-40
XP_006713402 (OMIM: 611965) PREDICTED: THO complex ( 152)  975 163.3 1.9e-40
NP_001272333 (OMIM: 611965) THO complex subunit 7  ( 152)  975 163.3 1.9e-40


>>NP_079351 (OMIM: 611965) THO complex subunit 7 homolog  (204 aa)
 initn: 1326 init1: 1326 opt: 1326  Z-score: 1142.1  bits: 218.3 E(85289): 7.1e-57
Smith-Waterman score: 1326; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE5 MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 EFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQT
              130       140       150       160       170       180

              190       200    
pF1KE5 LENDEKLSEVEEAQEASMETDPKP
       ::::::::::::::::::::::::
NP_079 LENDEKLSEVEEAQEASMETDPKP
              190       200    

>>NP_001272316 (OMIM: 611965) THO complex subunit 7 homo  (152 aa)
 initn: 975 init1: 975 opt: 975  Z-score: 847.1  bits: 163.3 E(85289): 1.9e-40
Smith-Waterman score: 975; 100.0% identity (100.0% similar) in 152 aa overlap (53-204:1-152)

             30        40        50        60        70        80  
pF1KE5 DDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYE
                                     ::::::::::::::::::::::::::::::
NP_001                               MLSTLSQCEFSMGKTLLVYDMNLREMENYE
                                             10        20        30

             90       100       110       120       130       140  
pF1KE5 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
               40        50        60        70        80        90

            150       160       170       180       190       200  
pF1KE5 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
              100       110       120       130       140       150

         
pF1KE5 KP
       ::
NP_001 KP
         

>>XP_006713402 (OMIM: 611965) PREDICTED: THO complex sub  (152 aa)
 initn: 975 init1: 975 opt: 975  Z-score: 847.1  bits: 163.3 E(85289): 1.9e-40
Smith-Waterman score: 975; 100.0% identity (100.0% similar) in 152 aa overlap (53-204:1-152)

             30        40        50        60        70        80  
pF1KE5 DDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYE
                                     ::::::::::::::::::::::::::::::
XP_006                               MLSTLSQCEFSMGKTLLVYDMNLREMENYE
                                             10        20        30

             90       100       110       120       130       140  
pF1KE5 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
               40        50        60        70        80        90

            150       160       170       180       190       200  
pF1KE5 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
              100       110       120       130       140       150

         
pF1KE5 KP
       ::
XP_006 KP
         

>>NP_001272333 (OMIM: 611965) THO complex subunit 7 homo  (152 aa)
 initn: 975 init1: 975 opt: 975  Z-score: 847.1  bits: 163.3 E(85289): 1.9e-40
Smith-Waterman score: 975; 100.0% identity (100.0% similar) in 152 aa overlap (53-204:1-152)

             30        40        50        60        70        80  
pF1KE5 DDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYE
                                     ::::::::::::::::::::::::::::::
NP_001                               MLSTLSQCEFSMGKTLLVYDMNLREMENYE
                                             10        20        30

             90       100       110       120       130       140  
pF1KE5 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
               40        50        60        70        80        90

            150       160       170       180       190       200  
pF1KE5 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
              100       110       120       130       140       150

         
pF1KE5 KP
       ::
NP_001 KP
         




204 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:51:50 2016 done: Mon Nov  7 22:51:51 2016
 Total Scan time:  6.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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