FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5248, 204 aa 1>>>pF1KE5248 204 - 204 aa - 204 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6535+/-0.000392; mu= 8.9272+/- 0.024 mean_var=140.0252+/-27.332, 0's: 0 Z-trim(116.1): 4 B-trim: 305 in 1/56 Lambda= 0.108385 statistics sampled from 26940 (26944) to 26940 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.316), width: 16 Scan time: 6.060 The best scores are: opt bits E(85289) NP_079351 (OMIM: 611965) THO complex subunit 7 hom ( 204) 1326 218.3 7.1e-57 NP_001272316 (OMIM: 611965) THO complex subunit 7 ( 152) 975 163.3 1.9e-40 XP_006713402 (OMIM: 611965) PREDICTED: THO complex ( 152) 975 163.3 1.9e-40 NP_001272333 (OMIM: 611965) THO complex subunit 7 ( 152) 975 163.3 1.9e-40 >>NP_079351 (OMIM: 611965) THO complex subunit 7 homolog (204 aa) initn: 1326 init1: 1326 opt: 1326 Z-score: 1142.1 bits: 218.3 E(85289): 7.1e-57 Smith-Waterman score: 1326; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE5 MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 EFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 ALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQT 130 140 150 160 170 180 190 200 pF1KE5 LENDEKLSEVEEAQEASMETDPKP :::::::::::::::::::::::: NP_079 LENDEKLSEVEEAQEASMETDPKP 190 200 >>NP_001272316 (OMIM: 611965) THO complex subunit 7 homo (152 aa) initn: 975 init1: 975 opt: 975 Z-score: 847.1 bits: 163.3 E(85289): 1.9e-40 Smith-Waterman score: 975; 100.0% identity (100.0% similar) in 152 aa overlap (53-204:1-152) 30 40 50 60 70 80 pF1KE5 DDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYE :::::::::::::::::::::::::::::: NP_001 MLSTLSQCEFSMGKTLLVYDMNLREMENYE 10 20 30 90 100 110 120 130 140 pF1KE5 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE5 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP 100 110 120 130 140 150 pF1KE5 KP :: NP_001 KP >>XP_006713402 (OMIM: 611965) PREDICTED: THO complex sub (152 aa) initn: 975 init1: 975 opt: 975 Z-score: 847.1 bits: 163.3 E(85289): 1.9e-40 Smith-Waterman score: 975; 100.0% identity (100.0% similar) in 152 aa overlap (53-204:1-152) 30 40 50 60 70 80 pF1KE5 DDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYE :::::::::::::::::::::::::::::: XP_006 MLSTLSQCEFSMGKTLLVYDMNLREMENYE 10 20 30 90 100 110 120 130 140 pF1KE5 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE5 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP 100 110 120 130 140 150 pF1KE5 KP :: XP_006 KP >>NP_001272333 (OMIM: 611965) THO complex subunit 7 homo (152 aa) initn: 975 init1: 975 opt: 975 Z-score: 847.1 bits: 163.3 E(85289): 1.9e-40 Smith-Waterman score: 975; 100.0% identity (100.0% similar) in 152 aa overlap (53-204:1-152) 30 40 50 60 70 80 pF1KE5 DDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYE :::::::::::::::::::::::::::::: NP_001 MLSTLSQCEFSMGKTLLVYDMNLREMENYE 10 20 30 90 100 110 120 130 140 pF1KE5 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE5 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP 100 110 120 130 140 150 pF1KE5 KP :: NP_001 KP 204 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:51:50 2016 done: Mon Nov 7 22:51:51 2016 Total Scan time: 6.060 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]