FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1930, 469 aa 1>>>pF1KE1930 469 - 469 aa - 469 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.8020+/-0.000547; mu= -7.4984+/- 0.034 mean_var=396.3650+/-79.385, 0's: 0 Z-trim(117.7): 3 B-trim: 33 in 1/56 Lambda= 0.064421 statistics sampled from 30027 (30030) to 30027 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.352), width: 16 Scan time: 10.660 The best scores are: opt bits E(85289) NP_005870 (OMIM: 605958,616777) E3 ubiquitin-prote ( 469) 3069 299.8 1e-80 XP_011531566 (OMIM: 605958,616777) PREDICTED: E3 u ( 392) 2420 239.4 1.3e-62 XP_016861015 (OMIM: 605958,616777) PREDICTED: E3 u ( 370) 1555 159.0 2e-38 >>NP_005870 (OMIM: 605958,616777) E3 ubiquitin-protein l (469 aa) initn: 3069 init1: 3069 opt: 3069 Z-score: 1570.1 bits: 299.8 E(85289): 1e-80 Smith-Waterman score: 3069; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:1-469) 10 20 30 40 50 60 pF1KE1 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 EEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 EEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL 370 380 390 400 410 420 430 440 450 460 pF1KE1 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS ::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS 430 440 450 460 >>XP_011531566 (OMIM: 605958,616777) PREDICTED: E3 ubiqu (392 aa) initn: 2420 init1: 2420 opt: 2420 Z-score: 1245.0 bits: 239.4 E(85289): 1.3e-62 Smith-Waterman score: 2420; 100.0% identity (100.0% similar) in 376 aa overlap (94-469:17-392) 70 80 90 100 110 120 pF1KE1 FDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVSLQQ :::::::::::::::::::::::::::::: XP_011 MDGQAFPFPPPSTPAPDKEKRDSQVIIDTLRDTLEERNATVVSLQQ 10 20 30 40 130 140 150 160 170 180 pF1KE1 ALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEVEEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEVEEM 50 60 70 80 90 100 190 200 210 220 230 240 pF1KE1 IRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVYSEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVYSEL 110 120 130 140 150 160 250 260 270 280 290 300 pF1KE1 DQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVEVNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVEVNL 170 180 190 200 210 220 310 320 330 340 350 360 pF1KE1 KLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGPRKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGPRKE 230 240 250 260 270 280 370 380 390 400 410 420 pF1KE1 SQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGLGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGLGGR 290 300 310 320 330 340 430 440 450 460 pF1KE1 TKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS :::::::::::::::::::::::::::::::::::::::::::::: XP_011 TKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS 350 360 370 380 390 >>XP_016861015 (OMIM: 605958,616777) PREDICTED: E3 ubiqu (370 aa) initn: 1555 init1: 1555 opt: 1555 Z-score: 810.9 bits: 159.0 E(85289): 2e-38 Smith-Waterman score: 2244; 78.9% identity (78.9% similar) in 469 aa overlap (1-469:1-370) 10 20 30 40 50 60 pF1KE1 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEV ::::::::::::::: XP_016 LQQALGKAEMLCSTL--------------------------------------------- 130 190 200 210 220 230 240 pF1KE1 EEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVY :::::: XP_016 ------------------------------------------------------KLQTVY 140 250 260 270 280 290 300 pF1KE1 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE 150 160 170 180 190 200 310 320 330 340 350 360 pF1KE1 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP 210 220 230 240 250 260 370 380 390 400 410 420 pF1KE1 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL 270 280 290 300 310 320 430 440 450 460 pF1KE1 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS ::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS 330 340 350 360 370 469 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:47:40 2016 done: Sun Nov 6 17:47:42 2016 Total Scan time: 10.660 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]