FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6532, 184 aa 1>>>pF1KE6532 184 - 184 aa - 184 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7961+/-0.000579; mu= 15.5936+/- 0.035 mean_var=57.7596+/-11.275, 0's: 0 Z-trim(112.0): 7 B-trim: 0 in 0/51 Lambda= 0.168757 statistics sampled from 12844 (12847) to 12844 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.395), width: 16 Scan time: 1.390 The best scores are: opt bits E(32554) CCDS2784.1 NDUFAF3 gene_id:25915|Hs108|chr3 ( 184) 1243 310.0 5.4e-85 CCDS2785.1 NDUFAF3 gene_id:25915|Hs108|chr3 ( 127) 859 216.4 5.6e-57 >>CCDS2784.1 NDUFAF3 gene_id:25915|Hs108|chr3 (184 aa) initn: 1243 init1: 1243 opt: 1243 Z-score: 1639.4 bits: 310.0 E(32554): 5.4e-85 Smith-Waterman score: 1243; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KE6 MATALALRSLYRARPSLRCPPVELPWAPRRGHRLSPADDELYQRTRISLLQREAAQAMYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 MATALALRSLYRARPSLRCPPVELPWAPRRGHRLSPADDELYQRTRISLLQREAAQAMYI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 DSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 DRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTSLTSLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 DRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTSLTSLG 130 140 150 160 170 180 pF1KE6 QAAQ :::: CCDS27 QAAQ >>CCDS2785.1 NDUFAF3 gene_id:25915|Hs108|chr3 (127 aa) initn: 859 init1: 859 opt: 859 Z-score: 1136.4 bits: 216.4 E(32554): 5.6e-57 Smith-Waterman score: 859; 100.0% identity (100.0% similar) in 127 aa overlap (58-184:1-127) 30 40 50 60 70 80 pF1KE6 PRRGHRLSPADDELYQRTRISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVV :::::::::::::::::::::::::::::: CCDS27 MYIDSYNSRGFMINGNRVLGPCALLPHSVV 10 20 30 90 100 110 120 130 140 pF1KE6 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP 40 50 60 70 80 90 150 160 170 180 pF1KE6 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ ::::::::::::::::::::::::::::::::::::: CCDS27 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ 100 110 120 184 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:09:41 2016 done: Tue Nov 8 14:09:41 2016 Total Scan time: 1.390 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]