FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5810, 448 aa 1>>>pF1KB5810 448 - 448 aa - 448 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0216+/-0.000294; mu= 10.8256+/- 0.019 mean_var=106.2736+/-21.367, 0's: 0 Z-trim(120.4): 413 B-trim: 49 in 1/52 Lambda= 0.124412 statistics sampled from 35095 (35518) to 35095 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.416), width: 16 Scan time: 10.460 The best scores are: opt bits E(85289) NP_000956 (OMIM: 180220,615524) retinoic acid rece ( 448) 3017 551.6 1.5e-156 NP_001277145 (OMIM: 180220,615524) retinoic acid r ( 455) 2651 485.9 9.3e-137 NP_001277195 (OMIM: 180220,615524) retinoic acid r ( 399) 2650 485.7 9.4e-137 NP_001277229 (OMIM: 180220,615524) retinoic acid r ( 405) 2650 485.7 9.5e-137 NP_001036193 (OMIM: 180190) retinoic acid receptor ( 443) 2276 418.6 1.7e-116 NP_001019980 (OMIM: 180240,612376) retinoic acid r ( 457) 2276 418.6 1.7e-116 XP_005257609 (OMIM: 180240,612376) PREDICTED: reti ( 478) 2231 410.5 4.8e-114 XP_011523397 (OMIM: 180240,612376) PREDICTED: reti ( 462) 2227 409.8 7.7e-114 NP_000955 (OMIM: 180240,612376) retinoic acid rece ( 462) 2227 409.8 7.7e-114 XP_005257611 (OMIM: 180240,612376) PREDICTED: reti ( 462) 2227 409.8 7.7e-114 XP_005257610 (OMIM: 180240,612376) PREDICTED: reti ( 462) 2227 409.8 7.7e-114 NP_001138773 (OMIM: 180240,612376) retinoic acid r ( 462) 2227 409.8 7.7e-114 XP_011523398 (OMIM: 180240,612376) PREDICTED: reti ( 404) 2225 409.4 8.7e-114 NP_057236 (OMIM: 180220,615524) retinoic acid rece ( 336) 2222 408.8 1.1e-113 NP_001277146 (OMIM: 180220,615524) retinoic acid r ( 336) 2222 408.8 1.1e-113 NP_001277205 (OMIM: 180220,615524) retinoic acid r ( 336) 2222 408.8 1.1e-113 NP_000957 (OMIM: 180190) retinoic acid receptor ga ( 454) 2199 404.8 2.5e-112 NP_001230659 (OMIM: 180190) retinoic acid receptor ( 382) 2116 389.8 6.5e-108 NP_001230661 (OMIM: 180190) retinoic acid receptor ( 432) 1858 343.6 6.3e-94 XP_016880409 (OMIM: 180240,612376) PREDICTED: reti ( 343) 1828 338.1 2.1e-92 NP_001277206 (OMIM: 180220,615524) retinoic acid r ( 402) 1806 334.2 3.8e-91 NP_001230660 (OMIM: 180190) retinoic acid receptor ( 333) 1777 329.0 1.2e-89 NP_001138774 (OMIM: 180240,612376) retinoic acid r ( 365) 1557 289.5 9.9e-78 NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 719 139.1 1.9e-32 NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 719 139.1 2.2e-32 NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 719 139.1 2.3e-32 XP_005246679 (OMIM: 168600,601828) PREDICTED: nucl ( 535) 714 138.3 4.9e-32 XP_016859708 (OMIM: 168600,601828) PREDICTED: nucl ( 598) 714 138.3 5.4e-32 NP_006177 (OMIM: 168600,601828) nuclear receptor s ( 598) 714 138.3 5.4e-32 XP_005246678 (OMIM: 168600,601828) PREDICTED: nucl ( 609) 714 138.3 5.5e-32 NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 712 137.9 6.3e-32 XP_016866665 (OMIM: 180246) PREDICTED: retinoic ac ( 414) 695 134.8 4.2e-31 XP_005249335 (OMIM: 180246) PREDICTED: retinoic ac ( 441) 695 134.8 4.4e-31 NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 695 134.9 5.2e-31 NP_775180 (OMIM: 139139) nuclear receptor subfamil ( 598) 693 134.5 7.4e-31 XP_006719427 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 693 134.5 7.4e-31 NP_002126 (OMIM: 139139) nuclear receptor subfamil ( 598) 693 134.5 7.4e-31 XP_005268881 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 693 134.5 7.4e-31 XP_006719426 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 693 134.5 7.4e-31 XP_016874736 (OMIM: 139139) PREDICTED: nuclear rec ( 602) 693 134.5 7.4e-31 NP_001189162 (OMIM: 139139) nuclear receptor subfa ( 611) 693 134.5 7.5e-31 NP_001189163 (OMIM: 139139) nuclear receptor subfa ( 652) 693 134.5 7.9e-31 XP_005268879 (OMIM: 139139) PREDICTED: nuclear rec ( 670) 693 134.5 8.1e-31 NP_001278918 (OMIM: 180246) retinoic acid receptor ( 347) 673 130.8 5.5e-30 XP_011513098 (OMIM: 180246) PREDICTED: retinoic ac ( 420) 673 130.9 6.5e-30 XP_016870651 (OMIM: 600542,612237) PREDICTED: nucl ( 626) 663 129.1 3.2e-29 NP_008912 (OMIM: 600542,612237) nuclear receptor s ( 626) 663 129.1 3.2e-29 NP_775292 (OMIM: 600542,612237) nuclear receptor s ( 637) 663 129.1 3.2e-29 NP_001127757 (OMIM: 602969) estrogen-related recep ( 435) 626 122.4 2.3e-27 XP_016856130 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 626 122.4 2.3e-27 >>NP_000956 (OMIM: 180220,615524) retinoic acid receptor (448 aa) initn: 3017 init1: 3017 opt: 3017 Z-score: 2931.3 bits: 551.6 E(85289): 1.5e-156 Smith-Waterman score: 3017; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448) 10 20 30 40 50 60 pF1KB5 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS 370 380 390 400 410 420 430 440 pF1KB5 SGNTAEHSPSISPSSVENSGVSQSPLVQ :::::::::::::::::::::::::::: NP_000 SGNTAEHSPSISPSSVENSGVSQSPLVQ 430 440 >>NP_001277145 (OMIM: 180220,615524) retinoic acid recep (455 aa) initn: 2651 init1: 2651 opt: 2651 Z-score: 2576.2 bits: 485.9 E(85289): 9.3e-137 Smith-Waterman score: 2651; 99.7% identity (100.0% similar) in 396 aa overlap (53-448:60-455) 30 40 50 60 70 80 pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF .::::::::::::::::::::::::::::: NP_001 PPVIGGLSLPPLHGLHGHPPPSGCSTPSPATIETQSTSSEELVPSPPSPLPPPRVYKPCF 30 40 50 60 70 80 90 100 110 120 130 140 pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF 90 100 110 120 130 140 150 160 170 180 190 200 pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT 150 160 170 180 190 200 210 220 230 240 250 260 pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL 210 220 230 240 250 260 270 280 290 300 310 320 pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL 270 280 290 300 310 320 330 340 350 360 370 380 pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA 330 340 350 360 370 380 390 400 410 420 430 440 pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS 390 400 410 420 430 440 pF1KB5 QSPLVQ :::::: NP_001 QSPLVQ 450 >>NP_001277195 (OMIM: 180220,615524) retinoic acid recep (399 aa) initn: 2650 init1: 2650 opt: 2650 Z-score: 2576.1 bits: 485.7 E(85289): 9.4e-137 Smith-Waterman score: 2650; 99.7% identity (100.0% similar) in 396 aa overlap (53-448:4-399) 30 40 50 60 70 80 pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF .::::::::::::::::::::::::::::: NP_001 MENAIETQSTSSEELVPSPPSPLPPPRVYKPCF 10 20 30 90 100 110 120 130 140 pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF 40 50 60 70 80 90 150 160 170 180 190 200 pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT 100 110 120 130 140 150 210 220 230 240 250 260 pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL 160 170 180 190 200 210 270 280 290 300 310 320 pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL 220 230 240 250 260 270 330 340 350 360 370 380 pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA 280 290 300 310 320 330 390 400 410 420 430 440 pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS 340 350 360 370 380 390 pF1KB5 QSPLVQ :::::: NP_001 QSPLVQ >>NP_001277229 (OMIM: 180220,615524) retinoic acid recep (405 aa) initn: 2650 init1: 2650 opt: 2650 Z-score: 2576.0 bits: 485.7 E(85289): 9.5e-137 Smith-Waterman score: 2650; 99.7% identity (100.0% similar) in 396 aa overlap (53-448:10-405) 30 40 50 60 70 80 pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF .::::::::::::::::::::::::::::: NP_001 MKLSRIAFPAIETQSTSSEELVPSPPSPLPPPRVYKPCF 10 20 30 90 100 110 120 130 140 pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF 40 50 60 70 80 90 150 160 170 180 190 200 pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT 100 110 120 130 140 150 210 220 230 240 250 260 pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL 160 170 180 190 200 210 270 280 290 300 310 320 pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL 220 230 240 250 260 270 330 340 350 360 370 380 pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA 280 290 300 310 320 330 390 400 410 420 430 440 pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS 340 350 360 370 380 390 pF1KB5 QSPLVQ :::::: NP_001 QSPLVQ 400 >>NP_001036193 (OMIM: 180190) retinoic acid receptor gam (443 aa) initn: 2277 init1: 2240 opt: 2276 Z-score: 2212.6 bits: 418.6 E(85289): 1.7e-116 Smith-Waterman score: 2276; 74.4% identity (89.7% similar) in 445 aa overlap (1-445:1-442) 10 20 30 40 50 60 pF1KB5 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS :.:::.... .: .. . .:.:.. .:.. . .::.:: . : . . ::.:::::: NP_001 MYDCMETFAPGPRRL--YGAAGPGAGLLRRATGGSCFAGLESFAWPQPASLQSVETQSTS 10 20 30 40 50 70 80 90 100 110 120 pF1KB5 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD :::.::: ::: ::::::::::::.:::::::::::.::::::::::::::::.:::::: NP_001 SEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRD 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB5 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL :::.:::::::::::::::::::::::::.:::::::::::.... .:::.. .:..: NP_001 KNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEEL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB5 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP :. ::::::::::::::::::::::::::.:::::::::::::::::::::::::::: NP_001 ITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLP 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB5 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD :::::.::::::::::::::::.::::::::::::::::::::::::::::::::::::: NP_001 GFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD 240 250 260 270 280 290 310 320 330 340 350 360 pF1KB5 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR :::.::.:::::::::::::::::::::::::.::::: :::::::::::::..: :.:: NP_001 LVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRR 300 310 320 330 340 350 370 380 390 400 410 420 pF1KB5 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS ::.:.:::..::::::::.::.:::::.::::::::: :::::.::::: : : . . NP_001 PSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQP 360 370 380 390 400 410 430 440 pF1KB5 SGNTAEHSPSISPSSVENSGVSQSPLVQ . . : . :.. ...: .:: NP_001 GPHPNASSEDEVPGG-QGKGGLKSPA 420 430 440 >>NP_001019980 (OMIM: 180240,612376) retinoic acid recep (457 aa) initn: 2277 init1: 2225 opt: 2276 Z-score: 2212.4 bits: 418.6 E(85289): 1.7e-116 Smith-Waterman score: 2302; 75.7% identity (88.0% similar) in 460 aa overlap (1-445:1-457) 10 20 30 40 50 pF1KB5 MFDCMDVLSVSPGQIL--DFYTASPSSCMLQEKALKAC--FSGLTQTE-WQHRHTAQSIE :.. ..: . .:. .: :::. . .:.: ::.: : .: .: :. . .::: NP_001 MYESVEVGGPTPNPFLVVDFYNQN-RACLLPEKGLPAPGPYSTPLRTPLWN--GSNHSIE 10 20 30 40 50 60 70 80 90 100 110 pF1KB5 TQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIY :::.::::.::::::: : ::.::::::::::::::::::::::::::::::::::::.: NP_001 TQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVY 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB5 TCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTA ::::::::.:::::::::::::::::::::::::::::::::::::. : ::.::: .: NP_001 TCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB5 ELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF :. .: ::.:::::::::.::::::::::.:...:: ::. ::::::::.:::::: ::: NP_001 EVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEF 180 190 200 210 220 230 240 250 260 270 280 290 pF1KB5 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF ::.::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 240 250 260 270 280 290 300 310 320 330 340 350 pF1KB5 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY ::::::::.::::::::::::.:::::::::::::::::::.: .:: ::::::::::.: NP_001 GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVY 300 310 320 330 340 350 360 370 380 390 400 410 pF1KB5 IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEP .::::::.::::::.:::::::::::::::::::::::::::::::::::::::::: . NP_001 VRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLDT 360 370 380 390 400 410 420 430 440 pF1KB5 LT--PSSSGNTA--------EHSPSISPSSVENSGVSQSPLVQ :. :...: . :::.:::: ..: ...:: NP_001 LSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 420 430 440 450 >>XP_005257609 (OMIM: 180240,612376) PREDICTED: retinoic (478 aa) initn: 2301 init1: 2218 opt: 2231 Z-score: 2168.5 bits: 410.5 E(85289): 4.8e-114 Smith-Waterman score: 2257; 81.8% identity (92.1% similar) in 406 aa overlap (50-445:73-478) 20 30 40 50 60 70 pF1KB5 TASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYK :...:::::.::::.::::::: : ::.:: XP_005 SPRLRGRWPGSAGQGAGGRAPRAGWRAGDVTGSAIETQSSSSEEIVPSPPSPPPLPRIYK 50 60 70 80 90 100 80 90 100 110 120 130 pF1KB5 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQ ::::::::::::::::::::::::::::::::::.:::::::::.::::::::::::::: XP_005 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQ 110 120 130 140 150 160 140 150 160 170 180 190 pF1KB5 KCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG ::::::::::::::::::::::. : ::.::: .: :. .: ::.:::::::::.::::: XP_005 KCFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG 170 180 190 200 210 220 200 210 220 230 240 250 pF1KB5 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL :::::.:...:: ::. ::::::::.:::::: :::::.::::: ::::::::::::::: XP_005 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 230 240 250 260 270 280 260 270 280 290 300 310 pF1KB5 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::.:: XP_005 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 290 300 310 320 330 340 320 330 340 350 360 370 pF1KB5 GLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRS :::::::::::::::::.: .:: ::::::::::.:.::::::.::::::.::::::::: XP_005 GLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 350 360 370 380 390 400 380 390 400 410 420 pF1KB5 ISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLT--PSSSGNTA--------EHSP ::::::::::::::::::::::::::::::::: . :. :...: . :: XP_005 ISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSP 410 420 430 440 450 460 430 440 pF1KB5 SISPSSVENSGVSQSPLVQ :.:::: ..: ...:: XP_005 SLSPSSNRSSPATHSP 470 >>XP_011523397 (OMIM: 180240,612376) PREDICTED: retinoic (462 aa) initn: 2301 init1: 2218 opt: 2227 Z-score: 2164.8 bits: 409.8 E(85289): 7.7e-114 Smith-Waterman score: 2253; 82.1% identity (92.1% similar) in 403 aa overlap (53-445:60-462) 30 40 50 60 70 80 pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF .:::::.::::.::::::: : ::.::::: XP_011 PMLGGLSPPGALTTLQHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCF 30 40 50 60 70 80 90 100 110 120 130 140 pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF :::::::::::::::::::::::::::::::.:::::::::.:::::::::::::::::: XP_011 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF 90 100 110 120 130 140 150 160 170 180 190 200 pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT :::::::::::::::::::. : ::.::: .: :. .: ::.:::::::::.:::::::: XP_011 EVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYT 150 160 170 180 190 200 210 220 230 240 250 260 pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL ::.:...:: ::. ::::::::.:::::: :::::.::::: :::::::::::::::::: XP_011 TNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL 210 220 230 240 250 260 270 280 290 300 310 320 pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL :::::::::::::::::::::::::::::::::::::::::.::::::::::::.::::: XP_011 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLL 270 280 290 300 310 320 330 340 350 360 370 380 pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA ::::::::::::::.: .:: ::::::::::.:.::::::.::::::.:::::::::::: XP_011 SAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISA 330 340 350 360 370 380 390 400 410 420 430 pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLT--PSSSGNTA--------EHSPSIS :::::::::::::::::::::::::::::: . :. :...: . :::.: XP_011 KGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLS 390 400 410 420 430 440 440 pF1KB5 PSSVENSGVSQSPLVQ ::: ..: ...:: XP_011 PSSNRSSPATHSP 450 460 >>NP_000955 (OMIM: 180240,612376) retinoic acid receptor (462 aa) initn: 2301 init1: 2218 opt: 2227 Z-score: 2164.8 bits: 409.8 E(85289): 7.7e-114 Smith-Waterman score: 2253; 82.1% identity (92.1% similar) in 403 aa overlap (53-445:60-462) 30 40 50 60 70 80 pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF .:::::.::::.::::::: : ::.::::: NP_000 PMLGGLSPPGALTTLQHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCF 30 40 50 60 70 80 90 100 110 120 130 140 pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF :::::::::::::::::::::::::::::::.:::::::::.:::::::::::::::::: NP_000 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF 90 100 110 120 130 140 150 160 170 180 190 200 pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT :::::::::::::::::::. : ::.::: .: :. .: ::.:::::::::.:::::::: NP_000 EVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYT 150 160 170 180 190 200 210 220 230 240 250 260 pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL ::.:...:: ::. ::::::::.:::::: :::::.::::: :::::::::::::::::: NP_000 TNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL 210 220 230 240 250 260 270 280 290 300 310 320 pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL :::::::::::::::::::::::::::::::::::::::::.::::::::::::.::::: NP_000 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLL 270 280 290 300 310 320 330 340 350 360 370 380 pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA ::::::::::::::.: .:: ::::::::::.:.::::::.::::::.:::::::::::: NP_000 SAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISA 330 340 350 360 370 380 390 400 410 420 430 pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLT--PSSSGNTA--------EHSPSIS :::::::::::::::::::::::::::::: . :. :...: . :::.: NP_000 KGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLS 390 400 410 420 430 440 440 pF1KB5 PSSVENSGVSQSPLVQ ::: ..: ...:: NP_000 PSSNRSSPATHSP 450 460 >>XP_005257611 (OMIM: 180240,612376) PREDICTED: retinoic (462 aa) initn: 2301 init1: 2218 opt: 2227 Z-score: 2164.8 bits: 409.8 E(85289): 7.7e-114 Smith-Waterman score: 2253; 82.1% identity (92.1% similar) in 403 aa overlap (53-445:60-462) 30 40 50 60 70 80 pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF .:::::.::::.::::::: : ::.::::: XP_005 PMLGGLSPPGALTTLQHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCF 30 40 50 60 70 80 90 100 110 120 130 140 pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF :::::::::::::::::::::::::::::::.:::::::::.:::::::::::::::::: XP_005 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF 90 100 110 120 130 140 150 160 170 180 190 200 pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT :::::::::::::::::::. : ::.::: .: :. .: ::.:::::::::.:::::::: XP_005 EVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYT 150 160 170 180 190 200 210 220 230 240 250 260 pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL ::.:...:: ::. ::::::::.:::::: :::::.::::: :::::::::::::::::: XP_005 TNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL 210 220 230 240 250 260 270 280 290 300 310 320 pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL :::::::::::::::::::::::::::::::::::::::::.::::::::::::.::::: XP_005 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLL 270 280 290 300 310 320 330 340 350 360 370 380 pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA ::::::::::::::.: .:: ::::::::::.:.::::::.::::::.:::::::::::: XP_005 SAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISA 330 340 350 360 370 380 390 400 410 420 430 pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLT--PSSSGNTA--------EHSPSIS :::::::::::::::::::::::::::::: . :. :...: . :::.: XP_005 KGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLS 390 400 410 420 430 440 440 pF1KB5 PSSVENSGVSQSPLVQ ::: ..: ...:: XP_005 PSSNRSSPATHSP 450 460 448 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:53:48 2016 done: Sun Nov 6 17:53:50 2016 Total Scan time: 10.460 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]