FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5810, 448 aa 1>>>pF1KB5810 448 - 448 aa - 448 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4747+/-0.000732; mu= 14.0781+/- 0.045 mean_var=102.7531+/-20.304, 0's: 0 Z-trim(112.6): 123 B-trim: 12 in 1/49 Lambda= 0.126525 statistics sampled from 13243 (13369) to 13243 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.411), width: 16 Scan time: 3.230 The best scores are: opt bits E(32554) CCDS2642.1 RARB gene_id:5915|Hs108|chr3 ( 448) 3017 560.7 1.1e-159 CCDS41790.1 RARG gene_id:5916|Hs108|chr12 ( 443) 2276 425.4 5.7e-119 CCDS42317.1 RARA gene_id:5914|Hs108|chr17 ( 457) 2276 425.4 5.8e-119 CCDS11366.1 RARA gene_id:5914|Hs108|chr17 ( 462) 2227 416.5 2.9e-116 CCDS46775.1 RARB gene_id:5915|Hs108|chr3 ( 336) 2222 415.5 4.2e-116 CCDS8850.1 RARG gene_id:5916|Hs108|chr12 ( 454) 2199 411.3 9.8e-115 CCDS58236.1 RARG gene_id:5916|Hs108|chr12 ( 382) 2116 396.2 3.1e-110 CCDS58237.1 RARG gene_id:5916|Hs108|chr12 ( 432) 1858 349.1 5.2e-96 CCDS45671.1 RARA gene_id:5914|Hs108|chr17 ( 365) 1557 294.1 1.6e-79 CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 ( 462) 719 141.2 2.1e-33 CCDS2201.1 NR4A2 gene_id:4929|Hs108|chr2 ( 598) 714 140.4 4.9e-33 CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 ( 533) 712 140.0 5.7e-33 CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 ( 537) 695 136.9 5e-32 CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12 ( 598) 693 136.5 7e-32 CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12 ( 611) 693 136.5 7.1e-32 CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12 ( 652) 693 136.5 7.5e-32 CCDS6743.1 NR4A3 gene_id:8013|Hs108|chr9 ( 626) 663 131.1 3.2e-30 CCDS6742.1 NR4A3 gene_id:8013|Hs108|chr9 ( 637) 663 131.1 3.3e-30 CCDS1517.1 ESRRG gene_id:2104|Hs108|chr1 ( 435) 626 124.2 2.6e-28 CCDS41468.1 ESRRG gene_id:2104|Hs108|chr1 ( 458) 626 124.2 2.7e-28 CCDS58061.1 ESRRG gene_id:2104|Hs108|chr1 ( 470) 607 120.8 3e-27 CCDS9850.2 ESRRB gene_id:2103|Hs108|chr14 ( 508) 603 120.0 5.4e-27 CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 ( 404) 583 116.3 5.6e-26 CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 ( 414) 568 113.6 3.8e-25 CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 ( 423) 567 113.4 4.4e-25 CCDS42316.1 THRA gene_id:7067|Hs108|chr17 ( 410) 538 108.1 1.7e-23 CCDS60830.1 ESRRA gene_id:2101|Hs108|chr11 ( 422) 515 103.9 3.2e-22 CCDS2641.1 THRB gene_id:7068|Hs108|chr3 ( 461) 502 101.6 1.8e-21 CCDS58546.1 THRA gene_id:7067|Hs108|chr17 ( 451) 458 93.6 4.5e-19 CCDS11360.1 THRA gene_id:7067|Hs108|chr17 ( 490) 450 92.1 1.3e-18 CCDS58673.1 NR1H2 gene_id:7376|Hs108|chr19 ( 363) 444 90.9 2.2e-18 CCDS42593.1 NR1H2 gene_id:7376|Hs108|chr19 ( 460) 444 91.0 2.7e-18 CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 ( 340) 425 87.5 2.3e-17 CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 ( 463) 425 87.5 3e-17 CCDS33718.1 NR1D2 gene_id:9975|Hs108|chr3 ( 579) 423 87.2 4.7e-17 CCDS45271.1 RORA gene_id:6095|Hs108|chr15 ( 468) 417 86.1 8.4e-17 CCDS10177.1 RORA gene_id:6095|Hs108|chr15 ( 523) 417 86.1 9.2e-17 CCDS10178.1 RORA gene_id:6095|Hs108|chr15 ( 548) 417 86.1 9.5e-17 CCDS10179.1 RORA gene_id:6095|Hs108|chr15 ( 556) 417 86.1 9.6e-17 CCDS74905.1 NR2C2 gene_id:7182|Hs108|chr3 ( 596) 409 84.7 2.8e-16 CCDS2621.1 NR2C2 gene_id:7182|Hs108|chr3 ( 615) 409 84.7 2.9e-16 CCDS41821.1 NR2C1 gene_id:7181|Hs108|chr12 ( 467) 404 83.7 4.3e-16 CCDS44953.1 NR2C1 gene_id:7181|Hs108|chr12 ( 483) 404 83.7 4.4e-16 CCDS9051.1 NR2C1 gene_id:7181|Hs108|chr12 ( 603) 404 83.8 5.3e-16 CCDS11361.1 NR1D1 gene_id:9572|Hs108|chr17 ( 614) 403 83.6 6.1e-16 CCDS6646.1 RORB gene_id:6096|Hs108|chr9 ( 459) 400 83.0 7.1e-16 CCDS1004.1 RORC gene_id:6097|Hs108|chr1 ( 518) 398 82.6 1e-15 CCDS68131.1 HNF4A gene_id:3172|Hs108|chr20 ( 395) 392 81.5 1.7e-15 CCDS46604.1 HNF4A gene_id:3172|Hs108|chr20 ( 442) 392 81.5 1.9e-15 CCDS42876.1 HNF4A gene_id:3172|Hs108|chr20 ( 452) 392 81.5 1.9e-15 >>CCDS2642.1 RARB gene_id:5915|Hs108|chr3 (448 aa) initn: 3017 init1: 3017 opt: 3017 Z-score: 2980.4 bits: 560.7 E(32554): 1.1e-159 Smith-Waterman score: 3017; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448) 10 20 30 40 50 60 pF1KB5 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS 370 380 390 400 410 420 430 440 pF1KB5 SGNTAEHSPSISPSSVENSGVSQSPLVQ :::::::::::::::::::::::::::: CCDS26 SGNTAEHSPSISPSSVENSGVSQSPLVQ 430 440 >>CCDS41790.1 RARG gene_id:5916|Hs108|chr12 (443 aa) initn: 2277 init1: 2240 opt: 2276 Z-score: 2249.4 bits: 425.4 E(32554): 5.7e-119 Smith-Waterman score: 2276; 74.4% identity (89.7% similar) in 445 aa overlap (1-445:1-442) 10 20 30 40 50 60 pF1KB5 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS :.:::.... .: .. . .:.:.. .:.. . .::.:: . : . . ::.:::::: CCDS41 MYDCMETFAPGPRRL--YGAAGPGAGLLRRATGGSCFAGLESFAWPQPASLQSVETQSTS 10 20 30 40 50 70 80 90 100 110 120 pF1KB5 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD :::.::: ::: ::::::::::::.:::::::::::.::::::::::::::::.:::::: CCDS41 SEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRD 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB5 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL :::.:::::::::::::::::::::::::.:::::::::::.... .:::.. .:..: CCDS41 KNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEEL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB5 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP :. ::::::::::::::::::::::::::.:::::::::::::::::::::::::::: CCDS41 ITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLP 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB5 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD :::::.::::::::::::::::.::::::::::::::::::::::::::::::::::::: CCDS41 GFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD 240 250 260 270 280 290 310 320 330 340 350 360 pF1KB5 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR :::.::.:::::::::::::::::::::::::.::::: :::::::::::::..: :.:: CCDS41 LVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRR 300 310 320 330 340 350 370 380 390 400 410 420 pF1KB5 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS ::.:.:::..::::::::.::.:::::.::::::::: :::::.::::: : : . . CCDS41 PSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQP 360 370 380 390 400 410 430 440 pF1KB5 SGNTAEHSPSISPSSVENSGVSQSPLVQ . . : . :.. ...: .:: CCDS41 GPHPNASSEDEVPGG-QGKGGLKSPA 420 430 440 >>CCDS42317.1 RARA gene_id:5914|Hs108|chr17 (457 aa) initn: 2277 init1: 2225 opt: 2276 Z-score: 2249.2 bits: 425.4 E(32554): 5.8e-119 Smith-Waterman score: 2302; 75.7% identity (88.0% similar) in 460 aa overlap (1-445:1-457) 10 20 30 40 50 pF1KB5 MFDCMDVLSVSPGQIL--DFYTASPSSCMLQEKALKAC--FSGLTQTE-WQHRHTAQSIE :.. ..: . .:. .: :::. . .:.: ::.: : .: .: :. . .::: CCDS42 MYESVEVGGPTPNPFLVVDFYNQN-RACLLPEKGLPAPGPYSTPLRTPLWN--GSNHSIE 10 20 30 40 50 60 70 80 90 100 110 pF1KB5 TQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIY :::.::::.::::::: : ::.::::::::::::::::::::::::::::::::::::.: CCDS42 TQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVY 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB5 TCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTA ::::::::.:::::::::::::::::::::::::::::::::::::. : ::.::: .: CCDS42 TCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB5 ELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF :. .: ::.:::::::::.::::::::::.:...:: ::. ::::::::.:::::: ::: CCDS42 EVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEF 180 190 200 210 220 230 240 250 260 270 280 290 pF1KB5 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF ::.::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 240 250 260 270 280 290 300 310 320 330 340 350 pF1KB5 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY ::::::::.::::::::::::.:::::::::::::::::::.: .:: ::::::::::.: CCDS42 GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVY 300 310 320 330 340 350 360 370 380 390 400 410 pF1KB5 IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEP .::::::.::::::.:::::::::::::::::::::::::::::::::::::::::: . CCDS42 VRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLDT 360 370 380 390 400 410 420 430 440 pF1KB5 LT--PSSSGNTA--------EHSPSISPSSVENSGVSQSPLVQ :. :...: . :::.:::: ..: ...:: CCDS42 LSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 420 430 440 450 >>CCDS11366.1 RARA gene_id:5914|Hs108|chr17 (462 aa) initn: 2301 init1: 2218 opt: 2227 Z-score: 2200.8 bits: 416.5 E(32554): 2.9e-116 Smith-Waterman score: 2253; 82.1% identity (92.1% similar) in 403 aa overlap (53-445:60-462) 30 40 50 60 70 80 pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF .:::::.::::.::::::: : ::.::::: CCDS11 PMLGGLSPPGALTTLQHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCF 30 40 50 60 70 80 90 100 110 120 130 140 pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF :::::::::::::::::::::::::::::::.:::::::::.:::::::::::::::::: CCDS11 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF 90 100 110 120 130 140 150 160 170 180 190 200 pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT :::::::::::::::::::. : ::.::: .: :. .: ::.:::::::::.:::::::: CCDS11 EVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYT 150 160 170 180 190 200 210 220 230 240 250 260 pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL ::.:...:: ::. ::::::::.:::::: :::::.::::: :::::::::::::::::: CCDS11 TNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL 210 220 230 240 250 260 270 280 290 300 310 320 pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL :::::::::::::::::::::::::::::::::::::::::.::::::::::::.::::: CCDS11 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLL 270 280 290 300 310 320 330 340 350 360 370 380 pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA ::::::::::::::.: .:: ::::::::::.:.::::::.::::::.:::::::::::: CCDS11 SAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISA 330 340 350 360 370 380 390 400 410 420 430 pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLT--PSSSGNTA--------EHSPSIS :::::::::::::::::::::::::::::: . :. :...: . :::.: CCDS11 KGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLS 390 400 410 420 430 440 440 pF1KB5 PSSVENSGVSQSPLVQ ::: ..: ...:: CCDS11 PSSNRSSPATHSP 450 460 >>CCDS46775.1 RARB gene_id:5915|Hs108|chr3 (336 aa) initn: 2222 init1: 2222 opt: 2222 Z-score: 2197.9 bits: 415.5 E(32554): 4.2e-116 Smith-Waterman score: 2222; 100.0% identity (100.0% similar) in 336 aa overlap (113-448:1-336) 90 100 110 120 130 140 pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF :::::::::::::::::::::::::::::: CCDS46 MIYTCHRDKNCVINKVTRNRCQYCRLQKCF 10 20 30 150 160 170 180 190 200 pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT 40 50 60 70 80 90 210 220 230 240 250 260 pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL 100 110 120 130 140 150 270 280 290 300 310 320 pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL 160 170 180 190 200 210 330 340 350 360 370 380 pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA 220 230 240 250 260 270 390 400 410 420 430 440 pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS 280 290 300 310 320 330 pF1KB5 QSPLVQ :::::: CCDS46 QSPLVQ >>CCDS8850.1 RARG gene_id:5916|Hs108|chr12 (454 aa) initn: 2230 init1: 2193 opt: 2199 Z-score: 2173.3 bits: 411.3 E(32554): 9.8e-115 Smith-Waterman score: 2199; 78.0% identity (90.6% similar) in 413 aa overlap (33-445:42-453) 10 20 30 40 50 60 pF1KB5 DCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSE :. : :: : . .. .. :.:::::::: CCDS88 GALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKEMASLSVETQSTSSE 20 30 40 50 60 70 70 80 90 100 110 120 pF1KB5 ELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKN :.::: ::: ::::::::::::.:::::::::::.::::::::::::::::.:::::::: CCDS88 EMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN 80 90 100 110 120 130 130 140 150 160 170 180 pF1KB5 CVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTE :.:::::::::::::::::::::::::.:::::::::::.... .:::.. .:..: CCDS88 CIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEELIT 140 150 160 170 180 190 190 200 210 220 230 240 pF1KB5 KIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGF :. ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: CCDS88 KVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGF 200 210 220 230 240 250 250 260 270 280 290 300 pF1KB5 TGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLV :::.::::::::::::::::.::::::::::::::::::::::::::::::::::::::: CCDS88 TGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLV 260 270 280 290 300 310 310 320 330 340 350 360 pF1KB5 FTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPS :.::.:::::::::::::::::::::::::.::::: :::::::::::::..: :.:::: CCDS88 FAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPS 320 330 340 350 360 370 370 380 390 400 410 420 pF1KB5 KPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSG .:.:::..::::::::.::.:::::.::::::::: :::::.::::: : : . . . CCDS88 QPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQPGP 380 390 400 410 420 430 430 440 pF1KB5 NTAEHSPSISPSSVENSGVSQSPLVQ . : . :.. ...: .:: CCDS88 HPNASSEDEVPGG-QGKGGLKSPA 440 450 >>CCDS58236.1 RARG gene_id:5916|Hs108|chr12 (382 aa) initn: 2144 init1: 2107 opt: 2116 Z-score: 2092.5 bits: 396.2 E(32554): 3.1e-110 Smith-Waterman score: 2116; 80.4% identity (92.1% similar) in 382 aa overlap (64-445:1-381) 40 50 60 70 80 90 pF1KB5 KACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHY .::: ::: ::::::::::::.:::::::: CCDS58 MVPSSPSPPPPPRVYKPCFVCNDKSSGYHY 10 20 30 100 110 120 130 140 150 pF1KB5 GVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRN :::.::::::::::::::::.:::::::::.:::::::::::::::::::::::::.::: CCDS58 GVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRN 40 50 60 70 80 90 160 170 180 190 200 210 pF1KB5 DRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRL ::::::::.... .:::.. .:..: :. ::::::::::::::::::::::::::.: CCDS58 DRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQL 100 110 120 130 140 150 220 230 240 250 260 270 pF1KB5 DLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPE ::::::::::::::::::::::::::::::::.::::::::::::::::.:::::::::: CCDS58 DLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE 160 170 180 190 200 210 280 290 300 310 320 330 pF1KB5 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQ ::::::::::::::::::::::::::::::.::.:::::::::::::::::::::::::. CCDS58 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRM 220 230 240 250 260 270 340 350 360 370 380 390 pF1KB5 DLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM ::::: :::::::::::::..: :.::::.:.:::..::::::::.::.:::::.::::: CCDS58 DLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 280 290 300 310 320 330 400 410 420 430 440 pF1KB5 EIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ :::: :::::.::::: : : . . . . : . :.. ...: .:: CCDS58 EIPGPMPPLIREMLENPEMFEDDSSQPGPHPNASSEDEVPGG-QGKGGLKSPA 340 350 360 370 380 >>CCDS58237.1 RARG gene_id:5916|Hs108|chr12 (432 aa) initn: 1862 init1: 1839 opt: 1858 Z-score: 1837.2 bits: 349.1 E(32554): 5.2e-96 Smith-Waterman score: 1858; 79.4% identity (91.9% similar) in 345 aa overlap (101-445:88-431) 80 90 100 110 120 130 pF1KB5 PLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTR :.:::::::::::.:::::::::.:::::: CCDS58 PGPGPACCAEPPAAPVSPDLNLLPGRNPPACNGFFRRSIQKNMVYTCHRDKNCIINKVTR 60 70 80 90 100 110 140 150 160 170 180 190 pF1KB5 NRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQE :::::::::::::::::::.:::::::::::.... .:::.. .:..: :. ::::: CCDS58 NRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQE 120 130 140 150 160 170 200 210 220 230 240 250 pF1KB5 TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQ :::::::::::::::::::::.:::::::::::::::::::::::::::::::::.:::: CCDS58 TFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQ 180 190 200 210 220 230 260 270 280 290 300 310 pF1KB5 ITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLL ::::::::::::.::::::::::::::::::::::::::::::::::::::::.::.::: CCDS58 ITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLL 240 250 260 270 280 290 320 330 340 350 360 370 pF1KB5 PLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKI ::::::::::::::::::::::.::::: :::::::::::::..: :.::::.:.:::.. CCDS58 PLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRM 300 310 320 330 340 350 380 390 400 410 420 430 pF1KB5 LMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPS ::::::::.::.:::::.::::::::: :::::.::::: : : . . . . : . CCDS58 LMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQPGPHPNASSED 360 370 380 390 400 410 440 pF1KB5 ISPSSVENSGVSQSPLVQ :.. ...: .:: CCDS58 EVPGG-QGKGGLKSPA 420 430 >>CCDS45671.1 RARA gene_id:5914|Hs108|chr17 (365 aa) initn: 1620 init1: 1545 opt: 1557 Z-score: 1541.4 bits: 294.1 E(32554): 1.6e-79 Smith-Waterman score: 1583; 78.3% identity (89.6% similar) in 309 aa overlap (147-445:57-365) 120 130 140 150 160 170 pF1KB5 CHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAE : .:::::::::::. : ::.::: .: : CCDS45 FFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPATVRNDRNKKKKEVPKPECSESYTLTPE 30 40 50 60 70 80 180 190 200 210 220 230 pF1KB5 LDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFA . .: ::.:::::::::.::::::::::.:...:: ::. ::::::::.:::::: :::: CCDS45 VGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFA 90 100 110 120 130 140 240 250 260 270 280 290 pF1KB5 KRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG :.::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 KQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG 150 160 170 180 190 200 300 310 320 330 340 350 pF1KB5 PLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYI :::::::.::::::::::::.:::::::::::::::::::.: .:: ::::::::::.:. CCDS45 PLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYV 210 220 230 240 250 260 360 370 380 390 400 410 pF1KB5 RKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPL ::::::.::::::.:::::::::::::::::::::::::::::::::::::::::: . : CCDS45 RKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLDTL 270 280 290 300 310 320 420 430 440 pF1KB5 T--PSSSGNTA--------EHSPSISPSSVENSGVSQSPLVQ . :...: . :::.:::: ..: ...:: CCDS45 SGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 330 340 350 360 >>CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 (462 aa) initn: 722 init1: 388 opt: 719 Z-score: 713.2 bits: 141.2 E(32554): 2.1e-33 Smith-Waterman score: 719; 35.0% identity (64.8% similar) in 349 aa overlap (65-408:119-456) 40 50 60 70 80 90 pF1KB5 ACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYG ::. :: . . : .: :.::: ::: CCDS35 TGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYG 90 100 110 120 130 140 100 110 120 130 140 150 pF1KB5 VSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRND : .::::::::.:...:.. :::. .:.:.:.: :::::::: :::. .::..:.:... CCDS35 VYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEE 150 160 170 180 190 200 160 170 180 190 200 210 pF1KB5 RNK-KKKETSKQECTESYEMTAELDDLTEKIRKAHQETFP---SLCQLGKYTTNSSADHR :.. : .. .. : : : :. : .:.: .:. . : . . . . :: . CCDS35 RQRGKDRNENEVESTSS----ANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 210 220 230 240 250 260 220 230 240 250 260 270 pF1KB5 VRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRY : .. . : : .. .::.:::.: :. : . ::. ::.:. ..:: . : CCDS35 VT-------NICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRS 270 280 290 300 310 280 290 300 310 320 pF1KB5 TPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTETGLLSAICLIC .: . .. :: ..:.. :.:: : . : :.: ..... ..:: :: : : :: :. CCDS35 IAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFN 320 330 340 350 360 370 330 340 350 360 370 380 pF1KB5 GDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVI : . : .:..:. :.: . .:. : ... : .: : :.:... ::::. : :... CCDS35 PDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLF 380 390 400 410 420 430 390 400 410 420 430 440 pF1KB5 TLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ .:. . ...:::: CCDS35 FFKLIGDTPIDTFLMEMLEAPHQMT 440 450 460 448 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:53:48 2016 done: Sun Nov 6 17:53:48 2016 Total Scan time: 3.230 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]