FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6386, 315 aa
  1>>>pF1KE6386 315 - 315 aa - 315 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5097+/-0.000717; mu= 14.4532+/- 0.043
 mean_var=69.5845+/-13.754, 0's: 0 Z-trim(109.3): 24  B-trim: 0 in 0/51
 Lambda= 0.153751
 statistics sampled from 10755 (10763) to 10755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.331), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS2464.1 RHBDD1 gene_id:84236|Hs108|chr2         ( 315) 2194 495.5 2.3e-140


>>CCDS2464.1 RHBDD1 gene_id:84236|Hs108|chr2              (315 aa)
 initn: 2194 init1: 2194 opt: 2194  Z-score: 2633.5  bits: 495.5 E(32554): 2.3e-140
Smith-Waterman score: 2194; 100.0% identity (100.0% similar) in 315 aa overlap (1-315:1-315)

               10        20        30        40        50        60
pF1KE6 MQRRSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSSCLSVEKCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MQRRSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSSCLSVEKCY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VAIHLFSPGTSFAGHLAGILVGLMYTQGPLKKIMEACAGGFSSSVGYPGRQYYFNSSGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 VAIHLFSPGTSFAGHLAGILVGLMYTQGPLKKIMEACAGGFSSSVGYPGRQYYFNSSGSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 GYQDYYPHGRPDHYEEAPRNYDTYTAGLSEEEQLERALQASLWDRGNTRNSPPPYGFHLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GYQDYYPHGRPDHYEEAPRNYDTYTAGLSEEEQLERALQASLWDRGNTRNSPPPYGFHLS
              250       260       270       280       290       300

              310     
pF1KE6 PEEMRRQRLHRFDSQ
       :::::::::::::::
CCDS24 PEEMRRQRLHRFDSQ
              310     




315 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:48:20 2016 done: Tue Nov  8 12:48:21 2016
 Total Scan time:  2.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]