FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6182, 142 aa 1>>>pF1KE6182 142 - 142 aa - 142 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3887+/-0.00036; mu= 11.2273+/- 0.022 mean_var=64.2577+/-13.301, 0's: 0 Z-trim(113.5): 32 B-trim: 59 in 1/52 Lambda= 0.159997 statistics sampled from 22899 (22931) to 22899 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.269), width: 16 Scan time: 4.770 The best scores are: opt bits E(85289) NP_001002258 (OMIM: 602736) ATP synthase F(0) comp ( 142) 896 215.1 3.1e-56 NP_001680 (OMIM: 602736) ATP synthase F(0) complex ( 142) 896 215.1 3.1e-56 NP_001177258 (OMIM: 602736) ATP synthase F(0) comp ( 105) 660 160.6 5.9e-40 NP_001317198 (OMIM: 603193) ATP synthase F(0) comp ( 141) 638 155.5 2.6e-38 XP_016874950 (OMIM: 603193) PREDICTED: ATP synthas ( 157) 638 155.6 2.8e-38 NP_001002031 (OMIM: 603193) ATP synthase F(0) comp ( 157) 638 155.6 2.8e-38 NP_005167 (OMIM: 603193) ATP synthase F(0) complex ( 198) 638 155.6 3.5e-38 XP_016874949 (OMIM: 603193) PREDICTED: ATP synthas ( 198) 638 155.6 3.5e-38 NP_001002027 (OMIM: 603192) ATP synthase F(0) comp ( 136) 586 143.5 1e-34 NP_005166 (OMIM: 603192) ATP synthase F(0) complex ( 136) 586 143.5 1e-34 >>NP_001002258 (OMIM: 602736) ATP synthase F(0) complex (142 aa) initn: 896 init1: 896 opt: 896 Z-score: 1130.7 bits: 215.1 E(85289): 3.1e-56 Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 70 80 90 100 110 120 130 140 pF1KE6 FALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::: NP_001 FALSEAMGLFCLMVAFLILFAM 130 140 >>NP_001680 (OMIM: 602736) ATP synthase F(0) complex sub (142 aa) initn: 896 init1: 896 opt: 896 Z-score: 1130.7 bits: 215.1 E(85289): 3.1e-56 Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 70 80 90 100 110 120 130 140 pF1KE6 FALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::: NP_001 FALSEAMGLFCLMVAFLILFAM 130 140 >>NP_001177258 (OMIM: 602736) ATP synthase F(0) complex (105 aa) initn: 660 init1: 660 opt: 660 Z-score: 838.3 bits: 160.6 E(85289): 5.9e-40 Smith-Waterman score: 660; 100.0% identity (100.0% similar) in 105 aa overlap (1-105:1-105) 10 20 30 40 50 60 pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG ::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR 70 80 90 100 130 140 pF1KE6 FALSEAMGLFCLMVAFLILFAM >>NP_001317198 (OMIM: 603193) ATP synthase F(0) complex (141 aa) initn: 645 init1: 525 opt: 638 Z-score: 808.9 bits: 155.5 E(85289): 2.6e-38 Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:1-141) 10 20 30 40 50 60 pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF ::::.:.. ::::... :.. ::.:: ::.::: : :. . . . .: . .: : NP_001 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 60 70 80 90 100 110 130 140 pF1KE6 FALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::: NP_001 FALSEAMGLFCLMVAFLILFAM 120 130 140 >>XP_016874950 (OMIM: 603193) PREDICTED: ATP synthase F( (157 aa) initn: 645 init1: 525 opt: 638 Z-score: 808.1 bits: 155.6 E(85289): 2.8e-38 Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:17-157) 10 20 30 40 pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTV ::::.:.. ::::... :.. ::.:: ::.::: : :. . XP_016 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSS 10 20 30 40 50 50 60 70 80 90 100 pF1KE6 FNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA . . .: . .: ::::::::::::::::::::::::::::::::::::::::::::: XP_016 LAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA 60 70 80 90 100 110 110 120 130 140 pF1KE6 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::::::::::::::::::: XP_016 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 120 130 140 150 >>NP_001002031 (OMIM: 603193) ATP synthase F(0) complex (157 aa) initn: 645 init1: 525 opt: 638 Z-score: 808.1 bits: 155.6 E(85289): 2.8e-38 Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:17-157) 10 20 30 40 pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTV ::::.:.. ::::... :.. ::.:: ::.::: : :. . NP_001 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSS 10 20 30 40 50 50 60 70 80 90 100 pF1KE6 FNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA . . .: . .: ::::::::::::::::::::::::::::::::::::::::::::: NP_001 LAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA 60 70 80 90 100 110 110 120 130 140 pF1KE6 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::::::::::::::::::: NP_001 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 120 130 140 150 >>NP_005167 (OMIM: 603193) ATP synthase F(0) complex sub (198 aa) initn: 645 init1: 525 opt: 638 Z-score: 806.6 bits: 155.6 E(85289): 3.5e-38 Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:58-198) 10 20 30 pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVL ::::.:.. ::::... :.. ::.:: :: NP_005 PSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVL 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE6 SRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGA .::: : :. . . . .: . .: ::::::::::::::::::::::::::::::: NP_005 KRPEIL-TDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGA 90 100 110 120 130 140 100 110 120 130 140 pF1KE6 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 150 160 170 180 190 >>XP_016874949 (OMIM: 603193) PREDICTED: ATP synthase F( (198 aa) initn: 645 init1: 525 opt: 638 Z-score: 806.6 bits: 155.6 E(85289): 3.5e-38 Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:58-198) 10 20 30 pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVL ::::.:.. ::::... :.. ::.:: :: XP_016 PSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVL 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE6 SRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGA .::: : :. . . . .: . .: ::::::::::::::::::::::::::::::: XP_016 KRPEIL-TDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGA 90 100 110 120 130 140 100 110 120 130 140 pF1KE6 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 150 160 170 180 190 >>NP_001002027 (OMIM: 603192) ATP synthase F(0) complex (136 aa) initn: 603 init1: 533 opt: 586 Z-score: 744.2 bits: 143.5 E(85289): 1e-34 Smith-Waterman score: 586; 70.4% identity (79.6% similar) in 142 aa overlap (1-142:1-136) 10 20 30 40 50 60 pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF : . . : .:.::: .: ::.::: :. : : . . : :. .::: NP_001 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG :::..::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 60 70 80 90 100 110 130 140 pF1KE6 FALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::: NP_001 FALSEAMGLFCLMVAFLILFAM 120 130 >>NP_005166 (OMIM: 603192) ATP synthase F(0) complex sub (136 aa) initn: 603 init1: 533 opt: 586 Z-score: 744.2 bits: 143.5 E(85289): 1e-34 Smith-Waterman score: 586; 70.4% identity (79.6% similar) in 142 aa overlap (1-142:1-136) 10 20 30 40 50 60 pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF : . . : .:.::: .: ::.::: :. : : . . : :. .::: NP_005 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG :::..::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 60 70 80 90 100 110 130 140 pF1KE6 FALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::: NP_005 FALSEAMGLFCLMVAFLILFAM 120 130 142 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:09:29 2016 done: Tue Nov 8 10:09:30 2016 Total Scan time: 4.770 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]